Hb_000975_370

Information

Type transcription factor
Description TF Family: MYB
Location Contig975: 352864-353974
Sequence    

Annotation

kegg
ID rcu:RCOM_0788410
description r2r3-myb transcription factor, putative
nr
ID XP_012064973.1
description PREDICTED: transcription factor MYB59 isoform X1 [Jatropha curcas]
swissprot
ID Q4JL84
description Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2
trembl
ID A0A067L6V8
description MYB family protein OS=Jatropha curcas GN=JCGZ_05658 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb59 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000975_370 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB59 isoform X1 [Jatropha curcas]
2 Hb_004013_020 0.116074633 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
3 Hb_001541_160 0.1310698899 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
4 Hb_000753_120 0.1460187036 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
5 Hb_000065_090 0.1595162595 - - potassium channel tetramerization domain-containing protein, putative [Ricinus communis]
6 Hb_002973_030 0.1613116551 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
7 Hb_002004_010 0.1666387053 - - CBL-interacting protein kinase 9 [Populus trichocarpa]
8 Hb_000836_600 0.1673606131 - - PREDICTED: delta(8)-fatty-acid desaturase 2 [Jatropha curcas]
9 Hb_002759_260 0.1771072636 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
10 Hb_023344_110 0.1789441885 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
11 Hb_002027_170 0.1820195948 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
12 Hb_000345_110 0.183764706 - - PREDICTED: uncharacterized protein LOC105647507 [Jatropha curcas]
13 Hb_000836_210 0.1862941135 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
14 Hb_013405_100 0.1873004997 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 8 [Jatropha curcas]
15 Hb_002311_110 0.1876293561 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000307_010 0.1879595955 - - PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Jatropha curcas]
17 Hb_000230_470 0.1884398516 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
18 Hb_178658_010 0.1890959767 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
19 Hb_031089_050 0.1904032234 - - kinase, putative [Ricinus communis]
20 Hb_000371_120 0.191982024 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_000975_370 Hb_000975_370 Hb_004013_020 Hb_004013_020 Hb_000975_370--Hb_004013_020 Hb_001541_160 Hb_001541_160 Hb_000975_370--Hb_001541_160 Hb_000753_120 Hb_000753_120 Hb_000975_370--Hb_000753_120 Hb_000065_090 Hb_000065_090 Hb_000975_370--Hb_000065_090 Hb_002973_030 Hb_002973_030 Hb_000975_370--Hb_002973_030 Hb_002004_010 Hb_002004_010 Hb_000975_370--Hb_002004_010 Hb_004013_020--Hb_000753_120 Hb_000836_600 Hb_000836_600 Hb_004013_020--Hb_000836_600 Hb_000230_470 Hb_000230_470 Hb_004013_020--Hb_000230_470 Hb_004013_020--Hb_000065_090 Hb_004013_020--Hb_001541_160 Hb_001541_160--Hb_002004_010 Hb_000836_210 Hb_000836_210 Hb_001541_160--Hb_000836_210 Hb_002849_110 Hb_002849_110 Hb_001541_160--Hb_002849_110 Hb_050847_030 Hb_050847_030 Hb_001541_160--Hb_050847_030 Hb_000753_120--Hb_000230_470 Hb_002909_100 Hb_002909_100 Hb_000753_120--Hb_002909_100 Hb_005408_100 Hb_005408_100 Hb_000753_120--Hb_005408_100 Hb_031089_050 Hb_031089_050 Hb_000753_120--Hb_031089_050 Hb_001948_090 Hb_001948_090 Hb_000753_120--Hb_001948_090 Hb_004116_180 Hb_004116_180 Hb_000065_090--Hb_004116_180 Hb_000307_010 Hb_000307_010 Hb_000065_090--Hb_000307_010 Hb_033152_100 Hb_033152_100 Hb_000065_090--Hb_033152_100 Hb_000221_090 Hb_000221_090 Hb_000065_090--Hb_000221_090 Hb_001133_010 Hb_001133_010 Hb_000065_090--Hb_001133_010 Hb_002973_030--Hb_002004_010 Hb_002066_010 Hb_002066_010 Hb_002973_030--Hb_002066_010 Hb_000479_060 Hb_000479_060 Hb_002973_030--Hb_000479_060 Hb_002973_030--Hb_000753_120 Hb_000270_750 Hb_000270_750 Hb_002973_030--Hb_000270_750 Hb_013405_100 Hb_013405_100 Hb_002973_030--Hb_013405_100 Hb_002004_010--Hb_013405_100 Hb_002004_010--Hb_050847_030 Hb_002311_110 Hb_002311_110 Hb_002004_010--Hb_002311_110 Hb_002004_010--Hb_002849_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.35162 5.66577 0.84106 4.67993 0.253558 0.51243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.601773 0.591397 0.424542 0.408158 3.0602

CAGE analysis