Hb_000976_020

Information

Type -
Description -
Location Contig976: 42228-53261
Sequence    

Annotation

kegg
ID rcu:RCOM_1575720
description leucoanthocyanidin dioxygenase, putative (EC:1.14.11.23 1.14.11.9)
nr
ID XP_002513396.1
description leucoanthocyanidin dioxygenase, putative [Ricinus communis]
swissprot
ID Q9LHN8
description Feruloyl CoA ortho-hydroxylase 1 OS=Arabidopsis thaliana GN=F6'H1 PE=1 SV=1
trembl
ID B9RI27
description Leucoanthocyanidin dioxygenase, putative OS=Ricinus communis GN=RCOM_1575720 PE=4 SV=1
Gene Ontology
ID GO:0005506
description feruloyl ortho-hydroxylase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64042: 43795-44110
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_020 0.0 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
2 Hb_008225_080 0.0829222596 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
3 Hb_000758_030 0.0831120025 transcription factor TF Family: ERF Ethylene-responsive transcription factor, putative [Ricinus communis]
4 Hb_001357_260 0.0837052407 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
5 Hb_000189_260 0.0859954143 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002965_020 0.0861283983 - - hypothetical protein JCGZ_18947 [Jatropha curcas]
7 Hb_020332_040 0.0883071364 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
8 Hb_002917_010 0.0885509395 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
9 Hb_004463_040 0.0902362207 - - -
10 Hb_002048_010 0.0954071298 - - unknown [Lotus japonicus]
11 Hb_000245_140 0.0982380385 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]
12 Hb_007875_070 0.1006018676 - - hypothetical protein JCGZ_05017 [Jatropha curcas]
13 Hb_000984_080 0.1017675014 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
14 Hb_076895_020 0.1039935035 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
15 Hb_008080_040 0.1068094845 - - hypothetical protein EUGRSUZ_D00834 [Eucalyptus grandis]
16 Hb_002110_270 0.1086209751 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
17 Hb_000939_030 0.1131694445 - - PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
18 Hb_012660_010 0.1156973217 - - hypothetical protein JCGZ_25971 [Jatropha curcas]
19 Hb_110218_010 0.1180951272 - - PREDICTED: uncharacterized protein LOC104428128 [Eucalyptus grandis]
20 Hb_000411_060 0.118429432 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]

Gene co-expression network

sample Hb_000976_020 Hb_000976_020 Hb_008225_080 Hb_008225_080 Hb_000976_020--Hb_008225_080 Hb_000758_030 Hb_000758_030 Hb_000976_020--Hb_000758_030 Hb_001357_260 Hb_001357_260 Hb_000976_020--Hb_001357_260 Hb_000189_260 Hb_000189_260 Hb_000976_020--Hb_000189_260 Hb_002965_020 Hb_002965_020 Hb_000976_020--Hb_002965_020 Hb_020332_040 Hb_020332_040 Hb_000976_020--Hb_020332_040 Hb_008225_080--Hb_000758_030 Hb_007875_070 Hb_007875_070 Hb_008225_080--Hb_007875_070 Hb_000984_080 Hb_000984_080 Hb_008225_080--Hb_000984_080 Hb_002110_270 Hb_002110_270 Hb_008225_080--Hb_002110_270 Hb_006006_070 Hb_006006_070 Hb_008225_080--Hb_006006_070 Hb_000758_030--Hb_002110_270 Hb_000758_030--Hb_006006_070 Hb_076895_020 Hb_076895_020 Hb_000758_030--Hb_076895_020 Hb_000539_080 Hb_000539_080 Hb_000758_030--Hb_000539_080 Hb_112082_030 Hb_112082_030 Hb_001357_260--Hb_112082_030 Hb_002917_010 Hb_002917_010 Hb_001357_260--Hb_002917_010 Hb_001357_260--Hb_002965_020 Hb_004586_080 Hb_004586_080 Hb_001357_260--Hb_004586_080 Hb_000327_300 Hb_000327_300 Hb_001357_260--Hb_000327_300 Hb_000189_260--Hb_020332_040 Hb_000189_260--Hb_002917_010 Hb_012660_010 Hb_012660_010 Hb_000189_260--Hb_012660_010 Hb_000189_260--Hb_001357_260 Hb_002048_010 Hb_002048_010 Hb_000189_260--Hb_002048_010 Hb_000245_140 Hb_000245_140 Hb_002965_020--Hb_000245_140 Hb_002965_020--Hb_002048_010 Hb_008080_040 Hb_008080_040 Hb_002965_020--Hb_008080_040 Hb_002965_020--Hb_002917_010 Hb_020332_040--Hb_012660_010 Hb_020332_040--Hb_002048_010 Hb_011486_030 Hb_011486_030 Hb_020332_040--Hb_011486_030 Hb_027141_010 Hb_027141_010 Hb_020332_040--Hb_027141_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0249176 2.25222 0.538195 0.637746 0 0.0154076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0133322 0.0209833 0.0200954 11.9916 0.403493

CAGE analysis