Hb_000976_120

Information

Type -
Description -
Location Contig976: 126913-128346
Sequence    

Annotation

kegg
ID pop:POPTR_0001s43000g
description mitotic spindle checkpoint family protein
nr
ID XP_012091557.1
description PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
swissprot
ID Q94FL5
description DNA polymerase zeta processivity subunit OS=Arabidopsis thaliana GN=REV7 PE=2 SV=1
trembl
ID A0A067JAZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21403 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna polymerase zeta processivity subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64057: 126938-128241
cDNA
(Sanger)
(ID:Location)		 045_K09.ab1: 126940-128024

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_120 0.0 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
2 Hb_001472_100 0.0582198657 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
3 Hb_003878_090 0.0584080526 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
4 Hb_003647_140 0.0609763939 - - PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]
5 Hb_002641_060 0.0615606842 - - prefoldin subunit, putative [Ricinus communis]
6 Hb_014834_150 0.0618159076 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_000579_120 0.0685343989 - - PREDICTED: uncharacterized protein LOC105633845 [Jatropha curcas]
8 Hb_002553_060 0.0686335956 - - PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial [Jatropha curcas]
9 Hb_000260_630 0.071055779 - - PREDICTED: altered inheritance rate of mitochondria protein 25 isoform X1 [Jatropha curcas]
10 Hb_003938_090 0.0715803782 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003513_010 0.0717598465 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
12 Hb_000373_050 0.0738345493 - - PREDICTED: protein WHI3 [Jatropha curcas]
13 Hb_000375_350 0.0755096819 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
14 Hb_003861_060 0.0762728111 - - PREDICTED: treacle protein [Jatropha curcas]
15 Hb_008616_050 0.0788634097 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
16 Hb_001946_400 0.0795277352 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
17 Hb_004545_110 0.0795649046 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
18 Hb_013575_010 0.0799122401 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
19 Hb_002820_050 0.0800647438 - - PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Jatropha curcas]
20 Hb_007878_010 0.0802749507 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000976_120 Hb_000976_120 Hb_001472_100 Hb_001472_100 Hb_000976_120--Hb_001472_100 Hb_003878_090 Hb_003878_090 Hb_000976_120--Hb_003878_090 Hb_003647_140 Hb_003647_140 Hb_000976_120--Hb_003647_140 Hb_002641_060 Hb_002641_060 Hb_000976_120--Hb_002641_060 Hb_014834_150 Hb_014834_150 Hb_000976_120--Hb_014834_150 Hb_000579_120 Hb_000579_120 Hb_000976_120--Hb_000579_120 Hb_002553_060 Hb_002553_060 Hb_001472_100--Hb_002553_060 Hb_000110_310 Hb_000110_310 Hb_001472_100--Hb_000110_310 Hb_107879_010 Hb_107879_010 Hb_001472_100--Hb_107879_010 Hb_000270_680 Hb_000270_680 Hb_001472_100--Hb_000270_680 Hb_003207_180 Hb_003207_180 Hb_001472_100--Hb_003207_180 Hb_003861_060 Hb_003861_060 Hb_003878_090--Hb_003861_060 Hb_000069_720 Hb_000069_720 Hb_003878_090--Hb_000069_720 Hb_003878_090--Hb_014834_150 Hb_000840_200 Hb_000840_200 Hb_003878_090--Hb_000840_200 Hb_133702_010 Hb_133702_010 Hb_003878_090--Hb_133702_010 Hb_003647_140--Hb_014834_150 Hb_000373_050 Hb_000373_050 Hb_003647_140--Hb_000373_050 Hb_003938_090 Hb_003938_090 Hb_003647_140--Hb_003938_090 Hb_003513_010 Hb_003513_010 Hb_003647_140--Hb_003513_010 Hb_001946_400 Hb_001946_400 Hb_003647_140--Hb_001946_400 Hb_013575_010 Hb_013575_010 Hb_002641_060--Hb_013575_010 Hb_007878_010 Hb_007878_010 Hb_002641_060--Hb_007878_010 Hb_008616_050 Hb_008616_050 Hb_002641_060--Hb_008616_050 Hb_008847_030 Hb_008847_030 Hb_002641_060--Hb_008847_030 Hb_003416_010 Hb_003416_010 Hb_002641_060--Hb_003416_010 Hb_000375_350 Hb_000375_350 Hb_002641_060--Hb_000375_350 Hb_014834_150--Hb_003861_060 Hb_014834_150--Hb_003513_010 Hb_000816_250 Hb_000816_250 Hb_014834_150--Hb_000816_250 Hb_003428_010 Hb_003428_010 Hb_014834_150--Hb_003428_010 Hb_004052_080 Hb_004052_080 Hb_014834_150--Hb_004052_080 Hb_000058_130 Hb_000058_130 Hb_000579_120--Hb_000058_130 Hb_001232_190 Hb_001232_190 Hb_000579_120--Hb_001232_190 Hb_000579_120--Hb_000110_310 Hb_009898_050 Hb_009898_050 Hb_000579_120--Hb_009898_050 Hb_000207_150 Hb_000207_150 Hb_000579_120--Hb_000207_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1696 9.61712 19.1826 16.5864 12.7064 12.6682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.5827 19.4885 11.2799 10.026 15.6949

CAGE analysis