Hb_000976_150

Information

Type -
Description -
Location Contig976: 149943-155856
Sequence    

Annotation

kegg
ID rcu:RCOM_1576190
description ribonucleic acid binding protein S1, putative
nr
ID XP_012087411.1
description PREDICTED: serine/arginine-rich splicing factor SR45 [Jatropha curcas]
swissprot
ID Q9SEE9
description Serine/arginine-rich splicing factor SR45 OS=Arabidopsis thaliana GN=SR45 PE=1 SV=1
trembl
ID A0A067JMI8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22652 PE=4 SV=1
Gene Ontology
ID GO:0000166
description serine arginine-rich splicing factor sr45

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64067: 150001-155717 , PASA_asmbl_64068: 156600-158096
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_150 0.0 - - PREDICTED: serine/arginine-rich splicing factor SR45 [Jatropha curcas]
2 Hb_025557_010 0.0803102622 - - PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Jatropha curcas]
3 Hb_000953_010 0.1049016231 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
4 Hb_001318_030 0.1055177016 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]
5 Hb_156850_030 0.1062285813 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
6 Hb_001584_160 0.1066548097 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Jatropha curcas]
7 Hb_001817_180 0.1073387723 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
8 Hb_005396_050 0.1090684292 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
9 Hb_000358_080 0.1100802147 - - Ribonuclease 3 [Gossypium arboreum]
10 Hb_005839_120 0.1104701278 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
11 Hb_002813_050 0.1114433748 desease resistance Gene Name: TIR_2 PREDICTED: uncharacterized protein LOC105635699 [Jatropha curcas]
12 Hb_000500_040 0.114443138 - - conserved hypothetical protein [Ricinus communis]
13 Hb_175338_030 0.1164060112 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
14 Hb_001274_020 0.1177240239 desease resistance Gene Name: ABC_tran ABC transporter GCN1 [Hevea brasiliensis]
15 Hb_000237_080 0.1187794997 transcription factor TF Family: PHD PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
16 Hb_010175_020 0.1196639162 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_063100_010 0.1202520785 - - TATA box-binding protein-associated factor [Populus trichocarpa]
18 Hb_010710_110 0.1204703354 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
19 Hb_000138_040 0.1205167663 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
20 Hb_000175_450 0.1242258748 - - PREDICTED: pentatricopeptide repeat-containing protein At1g52620 [Jatropha curcas]

Gene co-expression network

sample Hb_000976_150 Hb_000976_150 Hb_025557_010 Hb_025557_010 Hb_000976_150--Hb_025557_010 Hb_000953_010 Hb_000953_010 Hb_000976_150--Hb_000953_010 Hb_001318_030 Hb_001318_030 Hb_000976_150--Hb_001318_030 Hb_156850_030 Hb_156850_030 Hb_000976_150--Hb_156850_030 Hb_001584_160 Hb_001584_160 Hb_000976_150--Hb_001584_160 Hb_001817_180 Hb_001817_180 Hb_000976_150--Hb_001817_180 Hb_001720_050 Hb_001720_050 Hb_025557_010--Hb_001720_050 Hb_007364_010 Hb_007364_010 Hb_025557_010--Hb_007364_010 Hb_010710_110 Hb_010710_110 Hb_025557_010--Hb_010710_110 Hb_003777_330 Hb_003777_330 Hb_025557_010--Hb_003777_330 Hb_025557_010--Hb_001584_160 Hb_000803_190 Hb_000803_190 Hb_000953_010--Hb_000803_190 Hb_004734_060 Hb_004734_060 Hb_000953_010--Hb_004734_060 Hb_000836_360 Hb_000836_360 Hb_000953_010--Hb_000836_360 Hb_000173_400 Hb_000173_400 Hb_000953_010--Hb_000173_400 Hb_033152_080 Hb_033152_080 Hb_000953_010--Hb_033152_080 Hb_000953_010--Hb_156850_030 Hb_000237_080 Hb_000237_080 Hb_001318_030--Hb_000237_080 Hb_004032_270 Hb_004032_270 Hb_001318_030--Hb_004032_270 Hb_012807_050 Hb_012807_050 Hb_001318_030--Hb_012807_050 Hb_004128_060 Hb_004128_060 Hb_001318_030--Hb_004128_060 Hb_009838_050 Hb_009838_050 Hb_001318_030--Hb_009838_050 Hb_000032_320 Hb_000032_320 Hb_156850_030--Hb_000032_320 Hb_001728_100 Hb_001728_100 Hb_156850_030--Hb_001728_100 Hb_000059_210 Hb_000059_210 Hb_156850_030--Hb_000059_210 Hb_004204_080 Hb_004204_080 Hb_156850_030--Hb_004204_080 Hb_000077_070 Hb_000077_070 Hb_156850_030--Hb_000077_070 Hb_000386_030 Hb_000386_030 Hb_001584_160--Hb_000386_030 Hb_031042_020 Hb_031042_020 Hb_001584_160--Hb_031042_020 Hb_003750_080 Hb_003750_080 Hb_001584_160--Hb_003750_080 Hb_002986_130 Hb_002986_130 Hb_001584_160--Hb_002986_130 Hb_010175_020 Hb_010175_020 Hb_001584_160--Hb_010175_020 Hb_000413_180 Hb_000413_180 Hb_001584_160--Hb_000413_180 Hb_000138_040 Hb_000138_040 Hb_001817_180--Hb_000138_040 Hb_001454_060 Hb_001454_060 Hb_001817_180--Hb_001454_060 Hb_001057_010 Hb_001057_010 Hb_001817_180--Hb_001057_010 Hb_000358_080 Hb_000358_080 Hb_001817_180--Hb_000358_080 Hb_029281_010 Hb_029281_010 Hb_001817_180--Hb_029281_010 Hb_000172_400 Hb_000172_400 Hb_001817_180--Hb_000172_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
85.2676 96.1257 15.8567 9.8393 101.032 87.6089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
74.7478 63.9912 107.956 28.659 13.5136

CAGE analysis