Hb_000976_160

Information

Type -
Description -
Location Contig976: 156494-160230
Sequence    

Annotation

kegg
ID rcu:RCOM_1576200
description hypothetical protein
nr
ID XP_012087412.1
description PREDICTED: uncharacterized protein LOC105646211 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JQJ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22653 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64068: 156600-158096 , PASA_asmbl_64069: 159193-159909
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_160 0.0 - - PREDICTED: uncharacterized protein LOC105646211 isoform X1 [Jatropha curcas]
2 Hb_145314_010 0.1034140516 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
3 Hb_001102_140 0.1219342658 - - PREDICTED: methyl-CpG-binding domain-containing protein 2-like [Jatropha curcas]
4 Hb_000000_460 0.1245140615 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
5 Hb_000307_140 0.124897276 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
6 Hb_005725_080 0.131598453 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]
7 Hb_000413_010 0.1381963417 - - hypothetical protein JCGZ_21316 [Jatropha curcas]
8 Hb_003376_360 0.1388260431 - - PREDICTED: ubiquitin-like protein 5 [Nelumbo nucifera]
9 Hb_000442_150 0.1402793728 - - PREDICTED: uncharacterized protein LOC105649224 [Jatropha curcas]
10 Hb_005054_290 0.1408582417 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
11 Hb_001357_180 0.1411351904 - - hypothetical protein CISIN_1g036415mg [Citrus sinensis]
12 Hb_000031_060 0.1412242281 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
13 Hb_032208_090 0.1438119287 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
14 Hb_014497_050 0.1438176426 transcription factor TF Family: bZIP hypothetical protein JCGZ_08021 [Jatropha curcas]
15 Hb_000982_060 0.1444771744 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
16 Hb_010485_020 0.1449960521 - - PREDICTED: thaumatin-like protein 1b isoform X1 [Jatropha curcas]
17 Hb_001454_130 0.1462513004 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
18 Hb_000676_250 0.1462682918 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
19 Hb_000679_010 0.1468133458 - - PREDICTED: uncharacterized protein LOC105637663 [Jatropha curcas]
20 Hb_106724_020 0.1472192366 - - PREDICTED: actin-related protein 2/3 complex subunit 1A-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000976_160 Hb_000976_160 Hb_145314_010 Hb_145314_010 Hb_000976_160--Hb_145314_010 Hb_001102_140 Hb_001102_140 Hb_000976_160--Hb_001102_140 Hb_000000_460 Hb_000000_460 Hb_000976_160--Hb_000000_460 Hb_000307_140 Hb_000307_140 Hb_000976_160--Hb_000307_140 Hb_005725_080 Hb_005725_080 Hb_000976_160--Hb_005725_080 Hb_000413_010 Hb_000413_010 Hb_000976_160--Hb_000413_010 Hb_001454_130 Hb_001454_130 Hb_145314_010--Hb_001454_130 Hb_000205_300 Hb_000205_300 Hb_145314_010--Hb_000205_300 Hb_011671_240 Hb_011671_240 Hb_145314_010--Hb_011671_240 Hb_106724_020 Hb_106724_020 Hb_145314_010--Hb_106724_020 Hb_000120_060 Hb_000120_060 Hb_145314_010--Hb_000120_060 Hb_003693_070 Hb_003693_070 Hb_145314_010--Hb_003693_070 Hb_093084_050 Hb_093084_050 Hb_001102_140--Hb_093084_050 Hb_001102_140--Hb_106724_020 Hb_000656_110 Hb_000656_110 Hb_001102_140--Hb_000656_110 Hb_005054_290 Hb_005054_290 Hb_001102_140--Hb_005054_290 Hb_001102_140--Hb_000000_460 Hb_002685_110 Hb_002685_110 Hb_001102_140--Hb_002685_110 Hb_000000_460--Hb_005054_290 Hb_001439_100 Hb_001439_100 Hb_000000_460--Hb_001439_100 Hb_000705_210 Hb_000705_210 Hb_000000_460--Hb_000705_210 Hb_000679_010 Hb_000679_010 Hb_000000_460--Hb_000679_010 Hb_000329_630 Hb_000329_630 Hb_000000_460--Hb_000329_630 Hb_000085_180 Hb_000085_180 Hb_000307_140--Hb_000085_180 Hb_000307_140--Hb_005725_080 Hb_002188_130 Hb_002188_130 Hb_000307_140--Hb_002188_130 Hb_002774_060 Hb_002774_060 Hb_000307_140--Hb_002774_060 Hb_001269_680 Hb_001269_680 Hb_000307_140--Hb_001269_680 Hb_000442_150 Hb_000442_150 Hb_000307_140--Hb_000442_150 Hb_005725_080--Hb_000442_150 Hb_000699_140 Hb_000699_140 Hb_005725_080--Hb_000699_140 Hb_008246_040 Hb_008246_040 Hb_005725_080--Hb_008246_040 Hb_001357_180 Hb_001357_180 Hb_005725_080--Hb_001357_180 Hb_000031_060 Hb_000031_060 Hb_005725_080--Hb_000031_060 Hb_001481_120 Hb_001481_120 Hb_000413_010--Hb_001481_120 Hb_001205_070 Hb_001205_070 Hb_000413_010--Hb_001205_070 Hb_001178_140 Hb_001178_140 Hb_000413_010--Hb_001178_140 Hb_000859_060 Hb_000859_060 Hb_000413_010--Hb_000859_060 Hb_001277_270 Hb_001277_270 Hb_000413_010--Hb_001277_270 Hb_001892_020 Hb_001892_020 Hb_000413_010--Hb_001892_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.21784 2.73407 2.07274 5.30985 3.46275 2.82488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.41756 2.36997 5.51003 2.30845 0.624101

CAGE analysis