Hb_000976_170

Information

Type -
Description -
Location Contig976: 162593-167884
Sequence    

Annotation

kegg
ID rcu:RCOM_1576310
description Proteasome-activating nucleotidase, putative (EC:3.6.4.3)
nr
ID XP_012087415.1
description PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
swissprot
ID Q6NVR9
description ATPase family AAA domain-containing protein 3 OS=Xenopus tropicalis GN=atad3 PE=2 SV=1
trembl
ID A0A067K005
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22654 PE=4 SV=1
Gene Ontology
ID GO:0000502
description atpase family aaa domain-containing protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64070: 162568-167899
cDNA
(Sanger)
(ID:Location)		 052_E22.ab1: 162568-164406

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_170 0.0 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
2 Hb_000120_460 0.0481465758 - - PREDICTED: thioredoxin reductase NTRB-like [Jatropha curcas]
3 Hb_108350_010 0.0492785353 - - GTP-binding protein erg, putative [Ricinus communis]
4 Hb_002183_090 0.0605262053 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
5 Hb_000085_050 0.0629123294 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_025240_040 0.0685636649 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
7 Hb_127552_030 0.069563069 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
8 Hb_058999_020 0.0774431466 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
9 Hb_000092_170 0.0791184547 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
10 Hb_004254_120 0.0826247367 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001726_020 0.0865755555 - - PREDICTED: endophilin-A1 [Jatropha curcas]
12 Hb_004920_120 0.0866840052 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004218_110 0.0870169413 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
14 Hb_000107_330 0.0874142332 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Jatropha curcas]
15 Hb_005883_060 0.0886896746 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase NOL9 isoform X1 [Jatropha curcas]
16 Hb_000086_400 0.0889608891 - - calmodulin binding protein, putative [Ricinus communis]
17 Hb_005539_280 0.0890682899 - - PREDICTED: uncharacterized protein LOC105644562 [Jatropha curcas]
18 Hb_015934_070 0.090226664 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
19 Hb_002044_080 0.0904318928 - - PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Jatropha curcas]
20 Hb_155159_030 0.0905608261 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000976_170 Hb_000976_170 Hb_000120_460 Hb_000120_460 Hb_000976_170--Hb_000120_460 Hb_108350_010 Hb_108350_010 Hb_000976_170--Hb_108350_010 Hb_002183_090 Hb_002183_090 Hb_000976_170--Hb_002183_090 Hb_000085_050 Hb_000085_050 Hb_000976_170--Hb_000085_050 Hb_025240_040 Hb_025240_040 Hb_000976_170--Hb_025240_040 Hb_127552_030 Hb_127552_030 Hb_000976_170--Hb_127552_030 Hb_000120_460--Hb_025240_040 Hb_004218_110 Hb_004218_110 Hb_000120_460--Hb_004218_110 Hb_003697_040 Hb_003697_040 Hb_000120_460--Hb_003697_040 Hb_000120_460--Hb_108350_010 Hb_001545_170 Hb_001545_170 Hb_000120_460--Hb_001545_170 Hb_108350_010--Hb_000085_050 Hb_108350_010--Hb_002183_090 Hb_058999_020 Hb_058999_020 Hb_108350_010--Hb_058999_020 Hb_000092_170 Hb_000092_170 Hb_108350_010--Hb_000092_170 Hb_002183_090--Hb_000085_050 Hb_000384_100 Hb_000384_100 Hb_002183_090--Hb_000384_100 Hb_033834_040 Hb_033834_040 Hb_002183_090--Hb_033834_040 Hb_002044_080 Hb_002044_080 Hb_002183_090--Hb_002044_080 Hb_000251_130 Hb_000251_130 Hb_002183_090--Hb_000251_130 Hb_005618_170 Hb_005618_170 Hb_000085_050--Hb_005618_170 Hb_000085_050--Hb_058999_020 Hb_000107_330 Hb_000107_330 Hb_000085_050--Hb_000107_330 Hb_025240_040--Hb_004218_110 Hb_004254_120 Hb_004254_120 Hb_025240_040--Hb_004254_120 Hb_015934_070 Hb_015934_070 Hb_025240_040--Hb_015934_070 Hb_025240_040--Hb_127552_030 Hb_002759_060 Hb_002759_060 Hb_025240_040--Hb_002759_060 Hb_000421_220 Hb_000421_220 Hb_025240_040--Hb_000421_220 Hb_155159_030 Hb_155159_030 Hb_127552_030--Hb_155159_030 Hb_127552_030--Hb_015934_070 Hb_105123_010 Hb_105123_010 Hb_127552_030--Hb_105123_010 Hb_127552_030--Hb_108350_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.80699 4.23491 4.34878 5.47617 7.72777 11.6858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.02646 14.9791 13.115 10.6218 7.00519

CAGE analysis