Hb_000976_180

Information

Type -
Description -
Location Contig976: 168376-168873
Sequence    

Annotation

kegg
ID sot:102592049
description uncharacterized LOC102592049
nr
ID XP_006358324.1
description PREDICTED: uncharacterized protein LOC102592049 [Solanum tuberosum]
swissprot
ID -
description -
trembl
ID M1D1T9
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030915 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64071: 169391-175595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_180 0.0 - - PREDICTED: uncharacterized protein LOC102592049 [Solanum tuberosum]
2 Hb_004659_070 0.1761720642 - - PREDICTED: organ-specific protein P4-like [Vitis vinifera]
3 Hb_000318_260 0.183114152 - - PREDICTED: cell division cycle-associated 7-like protein [Jatropha curcas]
4 Hb_000987_050 0.1944910004 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
5 Hb_000317_080 0.2158255697 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
6 Hb_011515_030 0.2160726983 - - -
7 Hb_053543_010 0.2170876064 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000424_160 0.2217215211 - - hypothetical protein POPTR_0006s23570g [Populus trichocarpa]
9 Hb_004092_010 0.2241040339 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
10 Hb_002903_120 0.2244124161 - - -
11 Hb_003320_030 0.2257763702 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010368_070 0.2336124415 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010931_110 0.2370108626 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_141838_010 0.237839127 - - -
15 Hb_000088_030 0.2415653955 - - hypothetical protein JCGZ_10947 [Jatropha curcas]
16 Hb_001268_230 0.2483924226 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
17 Hb_001773_020 0.249281707 - - hypothetical protein POPTR_0016s00980g [Populus trichocarpa]
18 Hb_002983_100 0.2502750632 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF084 [Jatropha curcas]
19 Hb_005116_020 0.2516134822 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Sesamum indicum]
20 Hb_001628_110 0.2520072426 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]

Gene co-expression network

sample Hb_000976_180 Hb_000976_180 Hb_004659_070 Hb_004659_070 Hb_000976_180--Hb_004659_070 Hb_000318_260 Hb_000318_260 Hb_000976_180--Hb_000318_260 Hb_000987_050 Hb_000987_050 Hb_000976_180--Hb_000987_050 Hb_000317_080 Hb_000317_080 Hb_000976_180--Hb_000317_080 Hb_011515_030 Hb_011515_030 Hb_000976_180--Hb_011515_030 Hb_053543_010 Hb_053543_010 Hb_000976_180--Hb_053543_010 Hb_002903_120 Hb_002903_120 Hb_004659_070--Hb_002903_120 Hb_010368_070 Hb_010368_070 Hb_004659_070--Hb_010368_070 Hb_000525_040 Hb_000525_040 Hb_004659_070--Hb_000525_040 Hb_000173_210 Hb_000173_210 Hb_004659_070--Hb_000173_210 Hb_004659_070--Hb_000987_050 Hb_004712_110 Hb_004712_110 Hb_000318_260--Hb_004712_110 Hb_000318_260--Hb_000987_050 Hb_000424_160 Hb_000424_160 Hb_000318_260--Hb_000424_160 Hb_000318_260--Hb_000317_080 Hb_000088_030 Hb_000088_030 Hb_000318_260--Hb_000088_030 Hb_000987_050--Hb_053543_010 Hb_000987_050--Hb_000317_080 Hb_010931_110 Hb_010931_110 Hb_000987_050--Hb_010931_110 Hb_130177_010 Hb_130177_010 Hb_000987_050--Hb_130177_010 Hb_043959_010 Hb_043959_010 Hb_000987_050--Hb_043959_010 Hb_098315_110 Hb_098315_110 Hb_000987_050--Hb_098315_110 Hb_001268_230 Hb_001268_230 Hb_000317_080--Hb_001268_230 Hb_000317_080--Hb_098315_110 Hb_000317_080--Hb_053543_010 Hb_004648_040 Hb_004648_040 Hb_000317_080--Hb_004648_040 Hb_001628_110 Hb_001628_110 Hb_000317_080--Hb_001628_110 Hb_141838_010 Hb_141838_010 Hb_011515_030--Hb_141838_010 Hb_002983_100 Hb_002983_100 Hb_011515_030--Hb_002983_100 Hb_011515_030--Hb_000317_080 Hb_011515_030--Hb_002903_120 Hb_004092_010 Hb_004092_010 Hb_011515_030--Hb_004092_010 Hb_003320_030 Hb_003320_030 Hb_011515_030--Hb_003320_030 Hb_053543_010--Hb_043959_010 Hb_053543_010--Hb_001268_230 Hb_053543_010--Hb_098315_110 Hb_053543_010--Hb_130177_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.56722 0.055671 0.816309 0.0797917 14.3782 2.48016
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.12265 1.54827 0.794281 0 0

CAGE analysis