Hb_000976_210

Information

Type -
Description -
Location Contig976: 197683-201898
Sequence    

Annotation

kegg
ID rcu:RCOM_1576440
description hypothetical protein
nr
ID XP_012087418.1
description PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
swissprot
ID B5DF93
description Protein PAT1 homolog 1 OS=Rattus norvegicus GN=Patl1 PE=2 SV=1
trembl
ID A0A067JMJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22657 PE=4 SV=1
Gene Ontology
ID GO:0016853
description protein pat1 homolog 1 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64072: 185597-199591 , PASA_asmbl_64073: 198438-198684
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_210 0.0 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
2 Hb_002043_140 0.0543900413 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
3 Hb_003082_010 0.0544152455 - - PREDICTED: putative F-box protein At3g10240 [Jatropha curcas]
4 Hb_002006_040 0.0623174468 - - PREDICTED: translation initiation factor eIF-2B subunit delta isoform X1 [Jatropha curcas]
5 Hb_002217_170 0.0690812015 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
6 Hb_000317_370 0.0694284819 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]
7 Hb_002890_090 0.0730870051 - - Auxin response factor 1 [Glycine soja]
8 Hb_004553_030 0.077607523 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
9 Hb_002636_180 0.0800005443 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
10 Hb_000345_140 0.0802435072 - - PREDICTED: autophagy-related protein 18a-like [Jatropha curcas]
11 Hb_000330_040 0.0808809249 - - PREDICTED: protein RER1B-like [Jatropha curcas]
12 Hb_033772_030 0.0837641717 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
13 Hb_002798_070 0.0840816169 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
14 Hb_009615_170 0.0842880299 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
15 Hb_000243_250 0.0847961981 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
16 Hb_007163_120 0.0856453451 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
17 Hb_000107_490 0.0861504984 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
18 Hb_003729_030 0.0865095196 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
19 Hb_000402_230 0.0869346242 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
20 Hb_004109_030 0.0870749713 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000976_210 Hb_000976_210 Hb_002043_140 Hb_002043_140 Hb_000976_210--Hb_002043_140 Hb_003082_010 Hb_003082_010 Hb_000976_210--Hb_003082_010 Hb_002006_040 Hb_002006_040 Hb_000976_210--Hb_002006_040 Hb_002217_170 Hb_002217_170 Hb_000976_210--Hb_002217_170 Hb_000317_370 Hb_000317_370 Hb_000976_210--Hb_000317_370 Hb_002890_090 Hb_002890_090 Hb_000976_210--Hb_002890_090 Hb_011491_010 Hb_011491_010 Hb_002043_140--Hb_011491_010 Hb_002043_140--Hb_002006_040 Hb_008103_060 Hb_008103_060 Hb_002043_140--Hb_008103_060 Hb_007163_120 Hb_007163_120 Hb_002043_140--Hb_007163_120 Hb_009615_170 Hb_009615_170 Hb_002043_140--Hb_009615_170 Hb_004109_030 Hb_004109_030 Hb_003082_010--Hb_004109_030 Hb_008511_090 Hb_008511_090 Hb_003082_010--Hb_008511_090 Hb_003082_010--Hb_002043_140 Hb_003752_100 Hb_003752_100 Hb_003082_010--Hb_003752_100 Hb_003082_010--Hb_002890_090 Hb_023226_080 Hb_023226_080 Hb_002006_040--Hb_023226_080 Hb_003729_030 Hb_003729_030 Hb_002006_040--Hb_003729_030 Hb_000402_230 Hb_000402_230 Hb_002006_040--Hb_000402_230 Hb_002006_040--Hb_009615_170 Hb_003835_070 Hb_003835_070 Hb_002217_170--Hb_003835_070 Hb_001195_530 Hb_001195_530 Hb_002217_170--Hb_001195_530 Hb_002217_170--Hb_000317_370 Hb_003464_090 Hb_003464_090 Hb_002217_170--Hb_003464_090 Hb_105105_010 Hb_105105_010 Hb_002217_170--Hb_105105_010 Hb_000614_210 Hb_000614_210 Hb_002217_170--Hb_000614_210 Hb_011618_090 Hb_011618_090 Hb_000317_370--Hb_011618_090 Hb_000025_280 Hb_000025_280 Hb_000317_370--Hb_000025_280 Hb_000317_370--Hb_003835_070 Hb_000258_160 Hb_000258_160 Hb_000317_370--Hb_000258_160 Hb_003455_020 Hb_003455_020 Hb_002890_090--Hb_003455_020 Hb_000941_130 Hb_000941_130 Hb_002890_090--Hb_000941_130 Hb_002636_180 Hb_002636_180 Hb_002890_090--Hb_002636_180 Hb_002890_090--Hb_002043_140 Hb_002890_090--Hb_004109_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.2309 24.5466 8.32731 13.3156 16.5505 11.8181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.36005 9.82807 16.8592 13.5287 9.27889

CAGE analysis