Hb_000976_220

Information

Type -
Description -
Location Contig976: 205826-206676
Sequence    

Annotation

kegg
ID rcu:RCOM_1576490
description hypothetical protein
nr
ID XP_012087426.1
description PREDICTED: protein ALTERED XYLOGLUCAN 4-like [Jatropha curcas]
swissprot
ID Q9LRS2
description Protein ALTERED XYLOGLUCAN 4-like OS=Arabidopsis thaliana GN=AXY4L PE=2 SV=1
trembl
ID A0A067JMB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22661 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_220 0.0 - - PREDICTED: protein ALTERED XYLOGLUCAN 4-like [Jatropha curcas]
2 Hb_127120_010 5.34589e-05 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
3 Hb_007407_030 0.0002509982 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
4 Hb_006684_020 0.0109376374 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_026113_020 0.0140952534 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_000173_300 0.0248811437 - - PREDICTED: uncharacterized protein LOC105631894 [Jatropha curcas]
7 Hb_000529_120 0.0945399719 - - PREDICTED: uncharacterized protein LOC105641745 [Jatropha curcas]
8 Hb_007426_240 0.1164826298 - - -
9 Hb_000092_210 0.1595422083 - - -
10 Hb_023813_010 0.1908043713 - - PREDICTED: uncharacterized protein LOC105162193 [Sesamum indicum]
11 Hb_009722_020 0.2053242681 - - -
12 Hb_001045_100 0.2121342304 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
13 Hb_002249_060 0.2564706747 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_008202_030 0.2856028458 - - hypothetical protein B456_002G115600 [Gossypium raimondii]
15 Hb_000573_030 0.2970209049 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
16 Hb_000800_100 0.2998033396 - - hypothetical protein JCGZ_01543 [Jatropha curcas]
17 Hb_038098_010 0.3201419044 - - PREDICTED: uncharacterized protein LOC105793140 [Gossypium raimondii]
18 Hb_065525_140 0.3286131127 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
19 Hb_001377_390 0.3307257191 - - hypothetical protein POPTR_0002s17390g [Populus trichocarpa]
20 Hb_002641_110 0.3316712075 - - PREDICTED: uncharacterized protein LOC103448574 [Malus domestica]

Gene co-expression network

sample Hb_000976_220 Hb_000976_220 Hb_127120_010 Hb_127120_010 Hb_000976_220--Hb_127120_010 Hb_007407_030 Hb_007407_030 Hb_000976_220--Hb_007407_030 Hb_006684_020 Hb_006684_020 Hb_000976_220--Hb_006684_020 Hb_026113_020 Hb_026113_020 Hb_000976_220--Hb_026113_020 Hb_000173_300 Hb_000173_300 Hb_000976_220--Hb_000173_300 Hb_000529_120 Hb_000529_120 Hb_000976_220--Hb_000529_120 Hb_127120_010--Hb_007407_030 Hb_127120_010--Hb_006684_020 Hb_127120_010--Hb_026113_020 Hb_127120_010--Hb_000173_300 Hb_127120_010--Hb_000529_120 Hb_007407_030--Hb_006684_020 Hb_007407_030--Hb_026113_020 Hb_007407_030--Hb_000173_300 Hb_007407_030--Hb_000529_120 Hb_006684_020--Hb_026113_020 Hb_006684_020--Hb_000173_300 Hb_006684_020--Hb_000529_120 Hb_026113_020--Hb_000173_300 Hb_026113_020--Hb_000529_120 Hb_000173_300--Hb_000529_120 Hb_007426_240 Hb_007426_240 Hb_000529_120--Hb_007426_240 Hb_000092_210 Hb_000092_210 Hb_000529_120--Hb_000092_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0716965
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.146647 0 0 0

CAGE analysis