Hb_000976_230

Information

Type -
Description -
Location Contig976: 207784-209913
Sequence    

Annotation

kegg
ID rcu:RCOM_1574410
description 1,8-cineole synthase, chloroplast precursor, putative (EC:4.2.3.13)
nr
ID XP_012066852.1
description PREDICTED: probable terpene synthase 4 [Jatropha curcas]
swissprot
ID B9RHX7
description Probable terpene synthase 4 OS=Ricinus communis GN=TPS4 PE=3 SV=1
trembl
ID A0A067L548
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02816 PE=4 SV=1
Gene Ontology
ID GO:0016838
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_230 0.0 - - PREDICTED: probable terpene synthase 4 [Jatropha curcas]
2 Hb_000010_340 0.1804978806 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Jatropha curcas]
3 Hb_001049_110 0.1955441327 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_001546_060 0.1965400739 - - PREDICTED: uncharacterized protein LOC105133943 isoform X4 [Populus euphratica]
5 Hb_012760_190 0.1970613459 - - PREDICTED: fatty acyl-CoA reductase 2 [Jatropha curcas]
6 Hb_003976_020 0.1995629609 - - Regulator of ribonuclease activity A, putative [Ricinus communis]
7 Hb_001817_020 0.2007613133 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
8 Hb_005237_050 0.2031805656 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105630924 [Jatropha curcas]
9 Hb_165928_040 0.2060926287 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase component HRD3A [Jatropha curcas]
10 Hb_185447_010 0.2064200307 - - hypothetical protein JCGZ_13512 [Jatropha curcas]
11 Hb_000009_110 0.2075595436 - - Minor allergen Alt a, putative [Ricinus communis]
12 Hb_031421_010 0.2125042091 - - PREDICTED: copper chaperone for superoxide dismutase, chloroplastic/cytosolic [Jatropha curcas]
13 Hb_018133_090 0.2163042794 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000883_060 0.2163712831 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3-like [Jatropha curcas]
15 Hb_079312_010 0.2183480002 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000116_300 0.2212733781 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_001019_190 0.2212942609 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007632_220 0.2217741568 - - RNA-binding protein, putative [Ricinus communis]
19 Hb_000479_200 0.2226294052 - - PREDICTED: uncharacterized protein LOC105644128 [Jatropha curcas]
20 Hb_011004_020 0.2229466249 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]

Gene co-expression network

sample Hb_000976_230 Hb_000976_230 Hb_000010_340 Hb_000010_340 Hb_000976_230--Hb_000010_340 Hb_001049_110 Hb_001049_110 Hb_000976_230--Hb_001049_110 Hb_001546_060 Hb_001546_060 Hb_000976_230--Hb_001546_060 Hb_012760_190 Hb_012760_190 Hb_000976_230--Hb_012760_190 Hb_003976_020 Hb_003976_020 Hb_000976_230--Hb_003976_020 Hb_001817_020 Hb_001817_020 Hb_000976_230--Hb_001817_020 Hb_000883_060 Hb_000883_060 Hb_000010_340--Hb_000883_060 Hb_006711_100 Hb_006711_100 Hb_000010_340--Hb_006711_100 Hb_000352_190 Hb_000352_190 Hb_000010_340--Hb_000352_190 Hb_000010_340--Hb_001817_020 Hb_000913_020 Hb_000913_020 Hb_000010_340--Hb_000913_020 Hb_000471_110 Hb_000471_110 Hb_000010_340--Hb_000471_110 Hb_015941_020 Hb_015941_020 Hb_001049_110--Hb_015941_020 Hb_000061_210 Hb_000061_210 Hb_001049_110--Hb_000061_210 Hb_005686_090 Hb_005686_090 Hb_001049_110--Hb_005686_090 Hb_018133_090 Hb_018133_090 Hb_001049_110--Hb_018133_090 Hb_000295_080 Hb_000295_080 Hb_001049_110--Hb_000295_080 Hb_000556_090 Hb_000556_090 Hb_001049_110--Hb_000556_090 Hb_001546_060--Hb_001049_110 Hb_103118_010 Hb_103118_010 Hb_001546_060--Hb_103118_010 Hb_007317_140 Hb_007317_140 Hb_001546_060--Hb_007317_140 Hb_001546_060--Hb_000061_210 Hb_000415_040 Hb_000415_040 Hb_001546_060--Hb_000415_040 Hb_005253_030 Hb_005253_030 Hb_001546_060--Hb_005253_030 Hb_114336_020 Hb_114336_020 Hb_012760_190--Hb_114336_020 Hb_012760_190--Hb_103118_010 Hb_008554_070 Hb_008554_070 Hb_012760_190--Hb_008554_070 Hb_001439_060 Hb_001439_060 Hb_012760_190--Hb_001439_060 Hb_001491_010 Hb_001491_010 Hb_012760_190--Hb_001491_010 Hb_004116_140 Hb_004116_140 Hb_012760_190--Hb_004116_140 Hb_003976_020--Hb_018133_090 Hb_000462_090 Hb_000462_090 Hb_003976_020--Hb_000462_090 Hb_001824_090 Hb_001824_090 Hb_003976_020--Hb_001824_090 Hb_000608_170 Hb_000608_170 Hb_003976_020--Hb_000608_170 Hb_185447_010 Hb_185447_010 Hb_003976_020--Hb_185447_010 Hb_001584_200 Hb_001584_200 Hb_003976_020--Hb_001584_200 Hb_001493_180 Hb_001493_180 Hb_001817_020--Hb_001493_180 Hb_001090_050 Hb_001090_050 Hb_001817_020--Hb_001090_050 Hb_000059_050 Hb_000059_050 Hb_001817_020--Hb_000059_050 Hb_000260_570 Hb_000260_570 Hb_001817_020--Hb_000260_570 Hb_015198_020 Hb_015198_020 Hb_001817_020--Hb_015198_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0274361 0.0101189 0.0090965 0.0288105 0.0687512 0.0107223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0278516 0.0438254 0.0826367 0.0174708 0.092047

CAGE analysis