Hb_000976_250

Information

Type -
Description -
Location Contig976: 212221-213666
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64074: 212231-213708
cDNA
(Sanger)
(ID:Location)		 005_P22.ab1: 212379-213708 , 021_E22.ab1: 212380-213703 , 031_L12.ab1: 212454-213711 , 033_I13.ab1: 212303-213715 , 039_D12.ab1: 212406-213711 , 040_P02.ab1: 212379-213708 , 049_J10.ab1: 212303-213712

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_250 0.0 - - -
2 Hb_005914_200 0.0767796701 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
3 Hb_002518_290 0.0850390344 - - Acyl-coenzyme A thioesterase 13 [Gossypium arboreum]
4 Hb_012539_020 0.0905336116 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
5 Hb_005474_060 0.0913894496 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
6 Hb_032969_030 0.0927480388 - - calmodulin binding protein, putative [Ricinus communis]
7 Hb_000300_390 0.0949757113 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
8 Hb_001780_050 0.0958740802 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
9 Hb_000236_150 0.097058511 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
10 Hb_062135_020 0.098672142 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
11 Hb_000123_160 0.0993103058 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
12 Hb_004754_070 0.1012265464 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
13 Hb_003581_220 0.1091256957 - - unnamed protein product [Vitis vinifera]
14 Hb_008748_020 0.1091780984 - - hypothetical protein B456_005G210700 [Gossypium raimondii]
15 Hb_004007_180 0.1091932176 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
16 Hb_002316_120 0.1133999085 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
17 Hb_005663_120 0.1136985894 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
18 Hb_011377_020 0.1147796737 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
19 Hb_000318_490 0.1152382788 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
20 Hb_000163_130 0.116753187 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]

Gene co-expression network

sample Hb_000976_250 Hb_000976_250 Hb_005914_200 Hb_005914_200 Hb_000976_250--Hb_005914_200 Hb_002518_290 Hb_002518_290 Hb_000976_250--Hb_002518_290 Hb_012539_020 Hb_012539_020 Hb_000976_250--Hb_012539_020 Hb_005474_060 Hb_005474_060 Hb_000976_250--Hb_005474_060 Hb_032969_030 Hb_032969_030 Hb_000976_250--Hb_032969_030 Hb_000300_390 Hb_000300_390 Hb_000976_250--Hb_000300_390 Hb_001780_050 Hb_001780_050 Hb_005914_200--Hb_001780_050 Hb_000236_150 Hb_000236_150 Hb_005914_200--Hb_000236_150 Hb_005914_200--Hb_012539_020 Hb_004754_070 Hb_004754_070 Hb_005914_200--Hb_004754_070 Hb_000163_130 Hb_000163_130 Hb_005914_200--Hb_000163_130 Hb_062135_020 Hb_062135_020 Hb_002518_290--Hb_062135_020 Hb_002518_290--Hb_012539_020 Hb_002518_290--Hb_005914_200 Hb_002518_290--Hb_000236_150 Hb_003086_060 Hb_003086_060 Hb_002518_290--Hb_003086_060 Hb_000389_080 Hb_000389_080 Hb_012539_020--Hb_000389_080 Hb_012539_020--Hb_001780_050 Hb_012539_020--Hb_000300_390 Hb_002316_120 Hb_002316_120 Hb_012539_020--Hb_002316_120 Hb_005663_120 Hb_005663_120 Hb_012539_020--Hb_005663_120 Hb_003994_040 Hb_003994_040 Hb_005474_060--Hb_003994_040 Hb_000905_180 Hb_000905_180 Hb_005474_060--Hb_000905_180 Hb_002687_170 Hb_002687_170 Hb_005474_060--Hb_002687_170 Hb_011644_030 Hb_011644_030 Hb_005474_060--Hb_011644_030 Hb_003053_030 Hb_003053_030 Hb_005474_060--Hb_003053_030 Hb_000181_300 Hb_000181_300 Hb_005474_060--Hb_000181_300 Hb_032969_030--Hb_000300_390 Hb_003581_220 Hb_003581_220 Hb_032969_030--Hb_003581_220 Hb_032969_030--Hb_005663_120 Hb_001785_040 Hb_001785_040 Hb_032969_030--Hb_001785_040 Hb_001157_010 Hb_001157_010 Hb_032969_030--Hb_001157_010 Hb_000300_390--Hb_002316_120 Hb_000789_110 Hb_000789_110 Hb_000300_390--Hb_000789_110 Hb_000300_390--Hb_005663_120 Hb_120823_010 Hb_120823_010 Hb_000300_390--Hb_120823_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.7296 12.7398 41.9438 109.05 41.3948 141.787
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
313.021 653.485 332.209 85.8955 87.1017

CAGE analysis