Hb_000976_270

Information

Type -
Description -
Location Contig976: 216889-218950
Sequence    

Annotation

kegg
ID rcu:RCOM_1576540
description hypothetical protein
nr
ID XP_012087432.1
description PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JMC1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22666 PE=4 SV=1
Gene Ontology
ID GO:0031083
description snare-associated isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64076: 215894-216105 , PASA_asmbl_64077: 216875-219062 , PASA_asmbl_64078: 217154-218758
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_270 0.0 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
2 Hb_001663_110 0.0492472587 - - RNA binding protein, putative [Ricinus communis]
3 Hb_000205_120 0.0749108821 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
4 Hb_000209_090 0.0754666189 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
5 Hb_004447_030 0.0782599303 - - PREDICTED: glucose-induced degradation protein 4 homolog [Jatropha curcas]
6 Hb_004525_100 0.0786117959 - - hypothetical protein JCGZ_18418 [Jatropha curcas]
7 Hb_001956_120 0.0808107667 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000529_080 0.0826964181 - - PREDICTED: uncharacterized protein LOC105641675 [Jatropha curcas]
9 Hb_000236_280 0.0853900427 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
10 Hb_001741_140 0.0873092573 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
11 Hb_000265_150 0.0877260881 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
12 Hb_143766_090 0.0877611374 - - 60S ribosomal protein L31B [Hevea brasiliensis]
13 Hb_000347_080 0.0880463692 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
14 Hb_001623_370 0.089898212 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000141_060 0.0908017724 - - PREDICTED: uncharacterized protein LOC105632248 [Jatropha curcas]
16 Hb_003605_070 0.0910995703 - - PREDICTED: angio-associated migratory cell protein [Jatropha curcas]
17 Hb_004374_010 0.0928091076 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
18 Hb_143629_010 0.093843753 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
19 Hb_012305_070 0.0942838368 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000088_200 0.0964795391 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000976_270 Hb_000976_270 Hb_001663_110 Hb_001663_110 Hb_000976_270--Hb_001663_110 Hb_000205_120 Hb_000205_120 Hb_000976_270--Hb_000205_120 Hb_000209_090 Hb_000209_090 Hb_000976_270--Hb_000209_090 Hb_004447_030 Hb_004447_030 Hb_000976_270--Hb_004447_030 Hb_004525_100 Hb_004525_100 Hb_000976_270--Hb_004525_100 Hb_001956_120 Hb_001956_120 Hb_000976_270--Hb_001956_120 Hb_001663_110--Hb_004447_030 Hb_001663_110--Hb_000205_120 Hb_000236_280 Hb_000236_280 Hb_001663_110--Hb_000236_280 Hb_012305_070 Hb_012305_070 Hb_001663_110--Hb_012305_070 Hb_005237_060 Hb_005237_060 Hb_001663_110--Hb_005237_060 Hb_000529_080 Hb_000529_080 Hb_000205_120--Hb_000529_080 Hb_000265_150 Hb_000265_150 Hb_000205_120--Hb_000265_150 Hb_000205_120--Hb_004447_030 Hb_008887_050 Hb_008887_050 Hb_000205_120--Hb_008887_050 Hb_010968_010 Hb_010968_010 Hb_000205_120--Hb_010968_010 Hb_003605_070 Hb_003605_070 Hb_000209_090--Hb_003605_070 Hb_001741_140 Hb_001741_140 Hb_000209_090--Hb_001741_140 Hb_007534_040 Hb_007534_040 Hb_000209_090--Hb_007534_040 Hb_004044_020 Hb_004044_020 Hb_000209_090--Hb_004044_020 Hb_000209_090--Hb_004525_100 Hb_000347_080 Hb_000347_080 Hb_004447_030--Hb_000347_080 Hb_004447_030--Hb_000265_150 Hb_004447_030--Hb_000529_080 Hb_000088_200 Hb_000088_200 Hb_004525_100--Hb_000088_200 Hb_004525_100--Hb_000236_280 Hb_000617_220 Hb_000617_220 Hb_004525_100--Hb_000617_220 Hb_004525_100--Hb_004044_020 Hb_003126_040 Hb_003126_040 Hb_004525_100--Hb_003126_040 Hb_004374_010 Hb_004374_010 Hb_001956_120--Hb_004374_010 Hb_001956_120--Hb_000347_080 Hb_011537_040 Hb_011537_040 Hb_001956_120--Hb_011537_040 Hb_000062_230 Hb_000062_230 Hb_001956_120--Hb_000062_230 Hb_001956_120--Hb_001663_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.3032 3.76783 4.01246 2.51641 15.818 14.0486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.60713 9.43931 4.11902 3.38032 1.6805

CAGE analysis