Hb_000976_290

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig976: 229863-233824
Sequence    

Annotation

kegg
ID rcu:RCOM_1576560
description DNA binding protein, putative
nr
ID XP_012087433.1
description PREDICTED: uncharacterized protein LOC105646228 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JQL8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22668 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding bromodomain-containing isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64080: 229997-230616 , PASA_asmbl_64081: 230835-233380
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_290 0.0 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105646228 [Jatropha curcas]
2 Hb_000062_080 0.1149273979 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
3 Hb_127599_010 0.1252373737 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
4 Hb_003494_060 0.1321440976 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
5 Hb_000010_350 0.1384847108 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
6 Hb_002026_060 0.1451504471 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
7 Hb_001141_360 0.1461693041 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
8 Hb_000953_050 0.1473187814 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
9 Hb_000169_170 0.148757024 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
10 Hb_002572_050 0.1503173396 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
11 Hb_000123_330 0.1503378755 - - hypothetical protein M569_14136, partial [Genlisea aurea]
12 Hb_010921_030 0.1510516342 transcription factor TF Family: PHD PREDICTED: PHD finger protein At2g01810 [Jatropha curcas]
13 Hb_001225_090 0.1520349218 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
14 Hb_008511_100 0.1522435713 - - hypothetical protein POPTR_0009s11860g [Populus trichocarpa]
15 Hb_005496_180 0.1531185941 - - PREDICTED: U-box domain-containing protein 4-like [Jatropha curcas]
16 Hb_003060_090 0.1540135702 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
17 Hb_001865_060 0.1568452458 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
18 Hb_042175_010 0.156889171 - - hypothetical protein CISIN_1g0016721mg, partial [Citrus sinensis]
19 Hb_005656_140 0.1583332842 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 9 [Jatropha curcas]
20 Hb_004108_170 0.1590279721 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000976_290 Hb_000976_290 Hb_000062_080 Hb_000062_080 Hb_000976_290--Hb_000062_080 Hb_127599_010 Hb_127599_010 Hb_000976_290--Hb_127599_010 Hb_003494_060 Hb_003494_060 Hb_000976_290--Hb_003494_060 Hb_000010_350 Hb_000010_350 Hb_000976_290--Hb_000010_350 Hb_002026_060 Hb_002026_060 Hb_000976_290--Hb_002026_060 Hb_001141_360 Hb_001141_360 Hb_000976_290--Hb_001141_360 Hb_001865_060 Hb_001865_060 Hb_000062_080--Hb_001865_060 Hb_000062_080--Hb_127599_010 Hb_000448_060 Hb_000448_060 Hb_000062_080--Hb_000448_060 Hb_000802_190 Hb_000802_190 Hb_000062_080--Hb_000802_190 Hb_000062_080--Hb_000010_350 Hb_000062_080--Hb_001141_360 Hb_004218_090 Hb_004218_090 Hb_127599_010--Hb_004218_090 Hb_000169_170 Hb_000169_170 Hb_127599_010--Hb_000169_170 Hb_006738_050 Hb_006738_050 Hb_127599_010--Hb_006738_050 Hb_000700_060 Hb_000700_060 Hb_127599_010--Hb_000700_060 Hb_006683_040 Hb_006683_040 Hb_127599_010--Hb_006683_040 Hb_003494_060--Hb_001141_360 Hb_003494_060--Hb_001865_060 Hb_012725_040 Hb_012725_040 Hb_003494_060--Hb_012725_040 Hb_000483_040 Hb_000483_040 Hb_003494_060--Hb_000483_040 Hb_009838_060 Hb_009838_060 Hb_003494_060--Hb_009838_060 Hb_003494_060--Hb_000062_080 Hb_000010_350--Hb_001865_060 Hb_000866_370 Hb_000866_370 Hb_000010_350--Hb_000866_370 Hb_004108_170 Hb_004108_170 Hb_000010_350--Hb_004108_170 Hb_000010_350--Hb_000448_060 Hb_089100_040 Hb_089100_040 Hb_000010_350--Hb_089100_040 Hb_005496_180 Hb_005496_180 Hb_002026_060--Hb_005496_180 Hb_014068_050 Hb_014068_050 Hb_002026_060--Hb_014068_050 Hb_000634_070 Hb_000634_070 Hb_002026_060--Hb_000634_070 Hb_000809_090 Hb_000809_090 Hb_002026_060--Hb_000809_090 Hb_002097_200 Hb_002097_200 Hb_002026_060--Hb_002097_200 Hb_001141_360--Hb_001865_060 Hb_003120_050 Hb_003120_050 Hb_001141_360--Hb_003120_050 Hb_001141_360--Hb_012725_040 Hb_012226_010 Hb_012226_010 Hb_001141_360--Hb_012226_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.32073 18.5475 2.76011 2.94762 3.84536 2.47135
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.50946 4.22656 2.3255 6.20235 1.52072

CAGE analysis