Hb_000976_300

Information

Type -
Description -
Location Contig976: 236771-238823
Sequence    

Annotation

kegg
ID pop:POPTR_0001s05140g
description POPTRDRAFT_547690; hypothetical protein
nr
ID XP_012087434.1
description PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
swissprot
ID Q9ZD73
description Uncharacterized protein RP471 OS=Rickettsia prowazekii (strain Madrid E) GN=RP471 PE=4 SV=1
trembl
ID A0A067K022
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22669 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64083: 236865-238812
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_300 0.0 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
2 Hb_000028_480 0.0597791167 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
3 Hb_002496_010 0.0598714071 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
4 Hb_001357_020 0.0683113474 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
5 Hb_002518_260 0.0712845035 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
6 Hb_000977_110 0.0765999413 - - PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial [Jatropha curcas]
7 Hb_002600_150 0.0784640425 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
8 Hb_002849_100 0.0792814716 - - PREDICTED: mechanosensitive ion channel protein 1, mitochondrial [Jatropha curcas]
9 Hb_009486_140 0.0795260753 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
10 Hb_003376_400 0.0799263203 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
11 Hb_004225_050 0.0849354202 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
12 Hb_062135_030 0.0850414067 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
13 Hb_007479_040 0.0856393993 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001198_100 0.0861988109 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
15 Hb_029510_050 0.0877737627 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
16 Hb_003291_010 0.0888735595 - - ATP-dependent protease La, putative [Ricinus communis]
17 Hb_004254_090 0.0921759642 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
18 Hb_011386_010 0.0928276134 - - mitochondrial carrier protein, putative [Ricinus communis]
19 Hb_002006_030 0.0929160756 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER [Jatropha curcas]
20 Hb_000388_090 0.0933540697 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_000976_300 Hb_000976_300 Hb_000028_480 Hb_000028_480 Hb_000976_300--Hb_000028_480 Hb_002496_010 Hb_002496_010 Hb_000976_300--Hb_002496_010 Hb_001357_020 Hb_001357_020 Hb_000976_300--Hb_001357_020 Hb_002518_260 Hb_002518_260 Hb_000976_300--Hb_002518_260 Hb_000977_110 Hb_000977_110 Hb_000976_300--Hb_000977_110 Hb_002600_150 Hb_002600_150 Hb_000976_300--Hb_002600_150 Hb_000028_480--Hb_002518_260 Hb_007479_040 Hb_007479_040 Hb_000028_480--Hb_007479_040 Hb_000792_010 Hb_000792_010 Hb_000028_480--Hb_000792_010 Hb_001198_100 Hb_001198_100 Hb_000028_480--Hb_001198_100 Hb_028912_050 Hb_028912_050 Hb_000028_480--Hb_028912_050 Hb_002496_010--Hb_007479_040 Hb_002496_010--Hb_000028_480 Hb_002849_100 Hb_002849_100 Hb_002496_010--Hb_002849_100 Hb_002044_150 Hb_002044_150 Hb_002496_010--Hb_002044_150 Hb_002496_010--Hb_002600_150 Hb_001357_020--Hb_002600_150 Hb_001357_020--Hb_002518_260 Hb_000388_090 Hb_000388_090 Hb_001357_020--Hb_000388_090 Hb_029510_050 Hb_029510_050 Hb_001357_020--Hb_029510_050 Hb_001008_120 Hb_001008_120 Hb_001357_020--Hb_001008_120 Hb_000041_110 Hb_000041_110 Hb_002518_260--Hb_000041_110 Hb_002518_260--Hb_000792_010 Hb_009486_140 Hb_009486_140 Hb_002518_260--Hb_009486_140 Hb_011386_010 Hb_011386_010 Hb_002518_260--Hb_011386_010 Hb_000329_710 Hb_000329_710 Hb_002518_260--Hb_000329_710 Hb_001486_180 Hb_001486_180 Hb_000977_110--Hb_001486_180 Hb_003291_010 Hb_003291_010 Hb_000977_110--Hb_003291_010 Hb_000999_050 Hb_000999_050 Hb_000977_110--Hb_000999_050 Hb_004607_050 Hb_004607_050 Hb_000977_110--Hb_004607_050 Hb_004837_130 Hb_004837_130 Hb_000977_110--Hb_004837_130 Hb_000053_040 Hb_000053_040 Hb_002600_150--Hb_000053_040 Hb_012733_030 Hb_012733_030 Hb_002600_150--Hb_012733_030 Hb_000138_100 Hb_000138_100 Hb_002600_150--Hb_000138_100 Hb_013726_090 Hb_013726_090 Hb_002600_150--Hb_013726_090 Hb_001473_180 Hb_001473_180 Hb_002600_150--Hb_001473_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1695 11.7074 9.37893 9.17783 12.0326 17.4039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.8618 13.3968 20.0729 19.023 20.4932

CAGE analysis