Hb_000976_310

Information

Type -
Description -
Location Contig976: 238864-245019
Sequence    

Annotation

kegg
ID pmum:103341823
description uncharacterized LOC103341823
nr
ID XP_012087435.1
description PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
swissprot
ID F4K2F0
description Protein EMSY-LIKE 3 OS=Arabidopsis thaliana GN=EML3 PE=1 SV=1
trembl
ID A0A067JYR4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22670 PE=4 SV=1
Gene Ontology
ID GO:0008284
description emsy n terminus plant tudor-like domains-containing protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64084: 239550-245017 , PASA_asmbl_64085: 238835-245017 , PASA_asmbl_64086: 244420-245017
cDNA
(Sanger)
(ID:Location)		 007_D14.ab1: 244070-244951

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_310 0.0 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
2 Hb_001838_060 0.0608785936 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
3 Hb_001329_160 0.0648512338 - - PREDICTED: uncharacterized protein LOC105642679 isoform X1 [Jatropha curcas]
4 Hb_001157_040 0.0743480344 - - casein kinase, putative [Ricinus communis]
5 Hb_008959_020 0.0806567824 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
6 Hb_001546_080 0.081650602 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
7 Hb_000189_560 0.0850625772 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
8 Hb_004800_080 0.0857717381 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
9 Hb_007254_070 0.0866834807 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
10 Hb_011491_010 0.0901439236 - - Protein YME1, putative [Ricinus communis]
11 Hb_006478_040 0.0915658318 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
12 Hb_000318_250 0.0921022676 - - PREDICTED: uncharacterized protein LOC105634251 [Jatropha curcas]
13 Hb_002391_310 0.092709884 - - hypothetical protein PRUPE_ppa021315mg [Prunus persica]
14 Hb_001030_020 0.0929904409 - - Poly(A) polymerase alpha, putative [Ricinus communis]
15 Hb_000096_070 0.0936697439 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
16 Hb_003211_020 0.093867011 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Jatropha curcas]
17 Hb_120327_010 0.0945802746 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
18 Hb_000866_220 0.0952924126 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
19 Hb_000465_460 0.0955125655 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
20 Hb_007765_110 0.0958337582 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]

Gene co-expression network

sample Hb_000976_310 Hb_000976_310 Hb_001838_060 Hb_001838_060 Hb_000976_310--Hb_001838_060 Hb_001329_160 Hb_001329_160 Hb_000976_310--Hb_001329_160 Hb_001157_040 Hb_001157_040 Hb_000976_310--Hb_001157_040 Hb_008959_020 Hb_008959_020 Hb_000976_310--Hb_008959_020 Hb_001546_080 Hb_001546_080 Hb_000976_310--Hb_001546_080 Hb_000189_560 Hb_000189_560 Hb_000976_310--Hb_000189_560 Hb_001838_060--Hb_001157_040 Hb_001838_060--Hb_001329_160 Hb_007163_120 Hb_007163_120 Hb_001838_060--Hb_007163_120 Hb_001818_070 Hb_001818_070 Hb_001838_060--Hb_001818_070 Hb_000331_670 Hb_000331_670 Hb_001838_060--Hb_000331_670 Hb_001329_160--Hb_008959_020 Hb_001080_230 Hb_001080_230 Hb_001329_160--Hb_001080_230 Hb_000395_130 Hb_000395_130 Hb_001329_160--Hb_000395_130 Hb_001329_160--Hb_001546_080 Hb_000866_220 Hb_000866_220 Hb_001157_040--Hb_000866_220 Hb_000563_320 Hb_000563_320 Hb_001157_040--Hb_000563_320 Hb_000016_250 Hb_000016_250 Hb_001157_040--Hb_000016_250 Hb_001157_040--Hb_000331_670 Hb_000538_270 Hb_000538_270 Hb_001157_040--Hb_000538_270 Hb_000003_190 Hb_000003_190 Hb_008959_020--Hb_000003_190 Hb_008959_020--Hb_001546_080 Hb_007765_110 Hb_007765_110 Hb_008959_020--Hb_007765_110 Hb_008959_020--Hb_001080_230 Hb_001266_100 Hb_001266_100 Hb_008959_020--Hb_001266_100 Hb_000318_250 Hb_000318_250 Hb_001546_080--Hb_000318_250 Hb_000317_050 Hb_000317_050 Hb_001546_080--Hb_000317_050 Hb_003030_060 Hb_003030_060 Hb_001546_080--Hb_003030_060 Hb_000329_710 Hb_000329_710 Hb_001546_080--Hb_000329_710 Hb_006478_040 Hb_006478_040 Hb_001546_080--Hb_006478_040 Hb_005489_020 Hb_005489_020 Hb_001546_080--Hb_005489_020 Hb_000189_560--Hb_000866_220 Hb_007532_030 Hb_007532_030 Hb_000189_560--Hb_007532_030 Hb_000185_030 Hb_000185_030 Hb_000189_560--Hb_000185_030 Hb_007508_090 Hb_007508_090 Hb_000189_560--Hb_007508_090 Hb_000710_060 Hb_000710_060 Hb_000189_560--Hb_000710_060 Hb_004355_020 Hb_004355_020 Hb_000189_560--Hb_004355_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4952 23.8803 9.52299 7.35106 13.0583 17.4959
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.774 23.6557 15.3427 14.362 11.126

CAGE analysis