Hb_000976_330

Information

Type -
Description -
Location Contig976: 267925-268518
Sequence    

Annotation

kegg
ID pop:POPTR_0001s05180g
description POPTRDRAFT_814791; hypothetical protein
nr
ID XP_006368556.1
description hypothetical protein POPTR_0001s05180g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GNM1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s05180g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_330 0.0 - - hypothetical protein POPTR_0001s05180g [Populus trichocarpa]
2 Hb_002273_060 0.233551288 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010521_010 0.2689855616 - - hypothetical protein CICLE_v10026841mg [Citrus clementina]
4 Hb_002273_090 0.2799716998 - - -
5 Hb_005288_040 0.3096010251 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
6 Hb_000243_110 0.3099700434 - - PREDICTED: WAT1-related protein At3g53210-like [Jatropha curcas]
7 Hb_000645_110 0.3140055192 transcription factor TF Family: GRAS PREDICTED: DELLA protein RGL1-like [Jatropha curcas]
8 Hb_000483_110 0.3148351303 transcription factor TF Family: zf-HD Mini zinc finger 2 isoform 2, partial [Theobroma cacao]
9 Hb_002110_260 0.3169659226 - - zinc finger protein, putative [Ricinus communis]
10 Hb_027445_050 0.3222548579 - - PREDICTED: titin isoform X13 [Jatropha curcas]
11 Hb_001635_050 0.3222884823 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Nicotiana sylvestris]
12 Hb_000402_010 0.3250512196 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 6 [Jatropha curcas]
13 Hb_000315_030 0.327015633 - - carbohydrate binding protein, putative [Ricinus communis]
14 Hb_129279_020 0.3326788256 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
15 Hb_004788_040 0.3343344216 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_007382_050 0.3345753609 - - PREDICTED: uncharacterized protein LOC105645009 [Jatropha curcas]
17 Hb_000025_020 0.3363874531 - - PREDICTED: cytochrome P450 71B34-like [Jatropha curcas]
18 Hb_000123_250 0.3365010365 - - PREDICTED: protein UPSTREAM OF FLC-like [Jatropha curcas]
19 Hb_006586_030 0.3371092671 - - PREDICTED: transcription factor LHW isoform X1 [Jatropha curcas]
20 Hb_021943_030 0.3414324725 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000976_330 Hb_000976_330 Hb_002273_060 Hb_002273_060 Hb_000976_330--Hb_002273_060 Hb_010521_010 Hb_010521_010 Hb_000976_330--Hb_010521_010 Hb_002273_090 Hb_002273_090 Hb_000976_330--Hb_002273_090 Hb_005288_040 Hb_005288_040 Hb_000976_330--Hb_005288_040 Hb_000243_110 Hb_000243_110 Hb_000976_330--Hb_000243_110 Hb_000645_110 Hb_000645_110 Hb_000976_330--Hb_000645_110 Hb_002273_060--Hb_002273_090 Hb_001635_050 Hb_001635_050 Hb_002273_060--Hb_001635_050 Hb_004788_040 Hb_004788_040 Hb_002273_060--Hb_004788_040 Hb_006586_030 Hb_006586_030 Hb_002273_060--Hb_006586_030 Hb_009848_030 Hb_009848_030 Hb_002273_060--Hb_009848_030 Hb_009848_040 Hb_009848_040 Hb_002273_060--Hb_009848_040 Hb_000189_230 Hb_000189_230 Hb_010521_010--Hb_000189_230 Hb_010521_010--Hb_000243_110 Hb_000315_030 Hb_000315_030 Hb_010521_010--Hb_000315_030 Hb_010810_090 Hb_010810_090 Hb_010521_010--Hb_010810_090 Hb_000089_150 Hb_000089_150 Hb_010521_010--Hb_000089_150 Hb_002273_090--Hb_001635_050 Hb_002273_090--Hb_009848_040 Hb_002273_090--Hb_009848_030 Hb_002273_050 Hb_002273_050 Hb_002273_090--Hb_002273_050 Hb_002273_080 Hb_002273_080 Hb_002273_090--Hb_002273_080 Hb_003071_060 Hb_003071_060 Hb_005288_040--Hb_003071_060 Hb_000025_020 Hb_000025_020 Hb_005288_040--Hb_000025_020 Hb_000220_160 Hb_000220_160 Hb_005288_040--Hb_000220_160 Hb_006478_180 Hb_006478_180 Hb_005288_040--Hb_006478_180 Hb_132880_030 Hb_132880_030 Hb_005288_040--Hb_132880_030 Hb_002325_020 Hb_002325_020 Hb_005288_040--Hb_002325_020 Hb_000011_480 Hb_000011_480 Hb_000243_110--Hb_000011_480 Hb_004894_010 Hb_004894_010 Hb_000243_110--Hb_004894_010 Hb_037960_010 Hb_037960_010 Hb_000243_110--Hb_037960_010 Hb_000243_110--Hb_000025_020 Hb_001410_100 Hb_001410_100 Hb_000243_110--Hb_001410_100 Hb_000483_110 Hb_000483_110 Hb_000243_110--Hb_000483_110 Hb_003073_180 Hb_003073_180 Hb_000645_110--Hb_003073_180 Hb_080147_100 Hb_080147_100 Hb_000645_110--Hb_080147_100 Hb_140049_050 Hb_140049_050 Hb_000645_110--Hb_140049_050 Hb_000209_110 Hb_000209_110 Hb_000645_110--Hb_000209_110 Hb_000317_360 Hb_000317_360 Hb_000645_110--Hb_000317_360 Hb_000157_130 Hb_000157_130 Hb_000645_110--Hb_000157_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0886193 0.390237 0 0 0.0836275 0.276241
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.165246 0 0.712114 0

CAGE analysis