Hb_000976_340

Information

Type -
Description -
Location Contig976: 274954-290411
Sequence    

Annotation

kegg
ID rcu:RCOM_1576610
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative (EC:2.7.10.2)
nr
ID XP_002513435.1
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
swissprot
ID Q39202
description G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2
trembl
ID B9RI66
description Serine/threonine-protein kinase OS=Ricinus communis GN=RCOM_1576610 PE=3 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase rlk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64088: 276734-277138 , PASA_asmbl_64090: 278085-278249 , PASA_asmbl_64093: 289219-289453
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_340 0.0 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
2 Hb_000116_290 0.0907704276 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
3 Hb_001248_170 0.093648546 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
4 Hb_000094_010 0.1037872762 - - lrr receptor protein kinase, putative [Ricinus communis]
5 Hb_005784_020 0.1074226064 - - Protein MKS1, putative [Ricinus communis]
6 Hb_008040_060 0.1130851507 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
7 Hb_002329_030 0.1135239321 - - PREDICTED: pleiotropic drug resistance protein 2-like isoform X1 [Jatropha curcas]
8 Hb_000589_330 0.114003763 - - kinase, putative [Ricinus communis]
9 Hb_145139_010 0.1148260879 - - PREDICTED: sugar transporter ERD6-like 5 isoform X1 [Vitis vinifera]
10 Hb_007007_090 0.1152580736 - - phospholipase d beta, putative [Ricinus communis]
11 Hb_017604_020 0.1176672559 - - hypothetical protein JCGZ_22673 [Jatropha curcas]
12 Hb_000808_160 0.1179766977 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
13 Hb_002529_080 0.1195950391 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase [Jatropha curcas]
14 Hb_064047_010 0.1203099307 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006615_180 0.1205584223 - - hypothetical protein B456_003G103400 [Gossypium raimondii]
16 Hb_002272_070 0.1225137788 - - PREDICTED: keratin, type I cytoskeletal 9 [Jatropha curcas]
17 Hb_000000_070 0.1253875522 - - allene oxide synthase [Hevea brasiliensis]
18 Hb_002475_010 0.1261639057 - - hypothetical protein JCGZ_22530 [Jatropha curcas]
19 Hb_000816_050 0.1267457402 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
20 Hb_002276_100 0.1287449304 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000976_340 Hb_000976_340 Hb_000116_290 Hb_000116_290 Hb_000976_340--Hb_000116_290 Hb_001248_170 Hb_001248_170 Hb_000976_340--Hb_001248_170 Hb_000094_010 Hb_000094_010 Hb_000976_340--Hb_000094_010 Hb_005784_020 Hb_005784_020 Hb_000976_340--Hb_005784_020 Hb_008040_060 Hb_008040_060 Hb_000976_340--Hb_008040_060 Hb_002329_030 Hb_002329_030 Hb_000976_340--Hb_002329_030 Hb_000116_290--Hb_000094_010 Hb_000589_330 Hb_000589_330 Hb_000116_290--Hb_000589_330 Hb_050236_010 Hb_050236_010 Hb_000116_290--Hb_050236_010 Hb_000116_290--Hb_001248_170 Hb_004282_040 Hb_004282_040 Hb_000116_290--Hb_004282_040 Hb_007007_090 Hb_007007_090 Hb_001248_170--Hb_007007_090 Hb_001248_170--Hb_008040_060 Hb_002370_060 Hb_002370_060 Hb_001248_170--Hb_002370_060 Hb_006573_280 Hb_006573_280 Hb_001248_170--Hb_006573_280 Hb_002529_080 Hb_002529_080 Hb_001248_170--Hb_002529_080 Hb_000094_010--Hb_002529_080 Hb_003914_050 Hb_003914_050 Hb_000094_010--Hb_003914_050 Hb_000094_010--Hb_008040_060 Hb_000522_130 Hb_000522_130 Hb_000094_010--Hb_000522_130 Hb_008092_020 Hb_008092_020 Hb_005784_020--Hb_008092_020 Hb_002276_100 Hb_002276_100 Hb_005784_020--Hb_002276_100 Hb_000028_460 Hb_000028_460 Hb_005784_020--Hb_000028_460 Hb_004544_090 Hb_004544_090 Hb_005784_020--Hb_004544_090 Hb_000497_100 Hb_000497_100 Hb_005784_020--Hb_000497_100 Hb_008040_060--Hb_002529_080 Hb_008040_060--Hb_003914_050 Hb_000027_060 Hb_000027_060 Hb_008040_060--Hb_000027_060 Hb_000000_070 Hb_000000_070 Hb_008040_060--Hb_000000_070 Hb_008667_030 Hb_008667_030 Hb_008040_060--Hb_008667_030 Hb_002272_070 Hb_002272_070 Hb_002329_030--Hb_002272_070 Hb_000072_160 Hb_000072_160 Hb_002329_030--Hb_000072_160 Hb_000007_210 Hb_000007_210 Hb_002329_030--Hb_000007_210 Hb_014361_130 Hb_014361_130 Hb_002329_030--Hb_014361_130 Hb_006615_190 Hb_006615_190 Hb_002329_030--Hb_006615_190 Hb_084127_010 Hb_084127_010 Hb_002329_030--Hb_084127_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0119146 2.87409 0.641018 1.54561 0.0230682 0.0209157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00899219 0 0.0272378 0.843091 0.744728

CAGE analysis