Hb_000976_380

Information

Type -
Description -
Location Contig976: 301983-309094
Sequence    

Annotation

kegg
ID rcu:RCOM_1576890
description lipoxygenase, putative (EC:1.13.11.12)
nr
ID XP_012092789.1
description PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
swissprot
ID O24370
description Linoleate 13S-lipoxygenase 2-1, chloroplastic OS=Solanum tuberosum GN=LOX2.1 PE=1 SV=1
trembl
ID A0A067JBW7
description Lipoxygenase OS=Jatropha curcas GN=JCGZ_07923 PE=3 SV=1
Gene Ontology
ID GO:0016702
description linoleate 13s-lipoxygenase 2- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64098: 305736-305890
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_380 0.0 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
2 Hb_012573_080 0.1695873166 - - hypothetical protein JCGZ_13311 [Jatropha curcas]
3 Hb_000665_010 0.1731662718 - - hypothetical protein 20 [Hevea brasiliensis]
4 Hb_010831_020 0.1774916844 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
5 Hb_007257_050 0.1825315852 - - protein with unknown function [Ricinus communis]
6 Hb_001638_040 0.1845333344 - - Nucleobase-ascorbate transporter 3 [Glycine soja]
7 Hb_002849_080 0.1851282264 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
8 Hb_006316_070 0.1884356959 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
9 Hb_005565_010 0.1888560414 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
10 Hb_164010_070 0.1897940279 - - Paramyosin, putative [Ricinus communis]
11 Hb_003517_060 0.1918407569 - - hypothetical protein CISIN_1g044999mg, partial [Citrus sinensis]
12 Hb_084429_010 0.1922771685 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Populus euphratica]
13 Hb_075449_020 0.1946127102 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
14 Hb_001769_010 0.1947586853 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000540_120 0.1958329367 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
16 Hb_025306_010 0.1968404632 transcription factor TF Family: MYB-related syringolide-induced protein 1-3-1B [Populus trichocarpa]
17 Hb_002609_010 0.199742429 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]
18 Hb_012395_160 0.1998819034 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
19 Hb_146464_010 0.2007815563 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
20 Hb_000009_580 0.2009527481 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]

Gene co-expression network

sample Hb_000976_380 Hb_000976_380 Hb_012573_080 Hb_012573_080 Hb_000976_380--Hb_012573_080 Hb_000665_010 Hb_000665_010 Hb_000976_380--Hb_000665_010 Hb_010831_020 Hb_010831_020 Hb_000976_380--Hb_010831_020 Hb_007257_050 Hb_007257_050 Hb_000976_380--Hb_007257_050 Hb_001638_040 Hb_001638_040 Hb_000976_380--Hb_001638_040 Hb_002849_080 Hb_002849_080 Hb_000976_380--Hb_002849_080 Hb_000987_140 Hb_000987_140 Hb_012573_080--Hb_000987_140 Hb_042038_020 Hb_042038_020 Hb_012573_080--Hb_042038_020 Hb_001123_290 Hb_001123_290 Hb_012573_080--Hb_001123_290 Hb_000140_070 Hb_000140_070 Hb_012573_080--Hb_000140_070 Hb_164010_070 Hb_164010_070 Hb_012573_080--Hb_164010_070 Hb_001049_030 Hb_001049_030 Hb_012573_080--Hb_001049_030 Hb_005551_060 Hb_005551_060 Hb_000665_010--Hb_005551_060 Hb_000525_010 Hb_000525_010 Hb_000665_010--Hb_000525_010 Hb_001950_030 Hb_001950_030 Hb_000665_010--Hb_001950_030 Hb_096224_040 Hb_096224_040 Hb_000665_010--Hb_096224_040 Hb_000665_010--Hb_000140_070 Hb_000009_580 Hb_000009_580 Hb_000665_010--Hb_000009_580 Hb_010831_020--Hb_001638_040 Hb_000540_120 Hb_000540_120 Hb_010831_020--Hb_000540_120 Hb_001691_150 Hb_001691_150 Hb_010831_020--Hb_001691_150 Hb_002316_050 Hb_002316_050 Hb_010831_020--Hb_002316_050 Hb_002739_150 Hb_002739_150 Hb_010831_020--Hb_002739_150 Hb_155702_010 Hb_155702_010 Hb_010831_020--Hb_155702_010 Hb_031089_030 Hb_031089_030 Hb_007257_050--Hb_031089_030 Hb_010584_010 Hb_010584_010 Hb_007257_050--Hb_010584_010 Hb_009028_030 Hb_009028_030 Hb_007257_050--Hb_009028_030 Hb_000265_250 Hb_000265_250 Hb_007257_050--Hb_000265_250 Hb_003349_010 Hb_003349_010 Hb_007257_050--Hb_003349_010 Hb_003157_010 Hb_003157_010 Hb_007257_050--Hb_003157_010 Hb_001638_040--Hb_000540_120 Hb_000449_050 Hb_000449_050 Hb_001638_040--Hb_000449_050 Hb_001638_040--Hb_164010_070 Hb_000853_030 Hb_000853_030 Hb_001638_040--Hb_000853_030 Hb_001638_040--Hb_002739_150 Hb_148209_020 Hb_148209_020 Hb_002849_080--Hb_148209_020 Hb_006316_070 Hb_006316_070 Hb_002849_080--Hb_006316_070 Hb_002977_010 Hb_002977_010 Hb_002849_080--Hb_002977_010 Hb_002609_010 Hb_002609_010 Hb_002849_080--Hb_002609_010 Hb_011465_030 Hb_011465_030 Hb_002849_080--Hb_011465_030 Hb_005038_020 Hb_005038_020 Hb_002849_080--Hb_005038_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.47577 0.865033 0.0411884 0.143394 0.26265 0.500007
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0987643 0.174843 0.183779 0.0850871 0

CAGE analysis