Hb_000976_400

Information

Type -
Description -
Location Contig976: 331322-333643
Sequence    

Annotation

kegg
ID rcu:RCOM_1576920
description synaptotagmin, putative
nr
ID XP_002513446.1
description synaptotagmin, putative [Ricinus communis]
swissprot
ID B8XCH5
description Protein QUIRKY OS=Arabidopsis thaliana GN=QKY PE=2 SV=1
trembl
ID B9RI77
description Synaptotagmin, putative OS=Ricinus communis GN=RCOM_1576920 PE=4 SV=1
Gene Ontology
ID GO:0009506
description calcium-dependent lipid-binding ( domain) plant phosphoribosyltransferase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64099: 330249-331245 , PASA_asmbl_64100: 331306-332939
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_400 0.0 - - synaptotagmin, putative [Ricinus communis]
2 Hb_005725_240 0.059503513 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
3 Hb_000622_050 0.0875962199 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000212_410 0.0957489827 - - PREDICTED: serine carboxypeptidase 1-like [Jatropha curcas]
5 Hb_001148_110 0.1007191049 - - -
6 Hb_000816_240 0.1026617503 - - PREDICTED: phosphoglucan phosphatase LSF2, chloroplastic [Jatropha curcas]
7 Hb_004220_010 0.1033927986 - - PREDICTED: uncharacterized protein LOC105642366 [Jatropha curcas]
8 Hb_000283_030 0.1040268774 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
9 Hb_000020_090 0.1073948342 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
10 Hb_103474_010 0.1093386499 - - serine/threonine protein kinase, putative [Ricinus communis]
11 Hb_000627_050 0.1095248721 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
12 Hb_001936_190 0.1122834921 - - hypothetical protein JCGZ_17780 [Jatropha curcas]
13 Hb_000012_330 0.1128786607 - - pollen specific protein sf21, putative [Ricinus communis]
14 Hb_000046_120 0.1137976087 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
15 Hb_001750_020 0.1172859718 - - PREDICTED: MATE efflux family protein 6-like isoform X1 [Jatropha curcas]
16 Hb_002822_010 0.1173295117 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Populus euphratica]
17 Hb_000424_130 0.1179050347 - - PREDICTED: monoacylglycerol lipase abhd6-B-like [Jatropha curcas]
18 Hb_009788_020 0.1179662286 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Jatropha curcas]
19 Hb_001942_010 0.1182494336 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
20 Hb_002818_150 0.1189645814 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]

Gene co-expression network

sample Hb_000976_400 Hb_000976_400 Hb_005725_240 Hb_005725_240 Hb_000976_400--Hb_005725_240 Hb_000622_050 Hb_000622_050 Hb_000976_400--Hb_000622_050 Hb_000212_410 Hb_000212_410 Hb_000976_400--Hb_000212_410 Hb_001148_110 Hb_001148_110 Hb_000976_400--Hb_001148_110 Hb_000816_240 Hb_000816_240 Hb_000976_400--Hb_000816_240 Hb_004220_010 Hb_004220_010 Hb_000976_400--Hb_004220_010 Hb_005725_240--Hb_000212_410 Hb_084303_010 Hb_084303_010 Hb_005725_240--Hb_084303_010 Hb_005725_240--Hb_000622_050 Hb_000012_330 Hb_000012_330 Hb_005725_240--Hb_000012_330 Hb_005725_240--Hb_000816_240 Hb_000622_050--Hb_000012_330 Hb_000622_050--Hb_004220_010 Hb_012098_160 Hb_012098_160 Hb_000622_050--Hb_012098_160 Hb_004531_170 Hb_004531_170 Hb_000622_050--Hb_004531_170 Hb_000627_050 Hb_000627_050 Hb_000212_410--Hb_000627_050 Hb_009788_020 Hb_009788_020 Hb_000212_410--Hb_009788_020 Hb_000703_120 Hb_000703_120 Hb_000212_410--Hb_000703_120 Hb_007270_020 Hb_007270_020 Hb_000212_410--Hb_007270_020 Hb_002724_010 Hb_002724_010 Hb_000212_410--Hb_002724_010 Hb_060253_010 Hb_060253_010 Hb_000212_410--Hb_060253_010 Hb_000722_030 Hb_000722_030 Hb_001148_110--Hb_000722_030 Hb_001638_200 Hb_001638_200 Hb_001148_110--Hb_001638_200 Hb_002835_310 Hb_002835_310 Hb_001148_110--Hb_002835_310 Hb_000156_110 Hb_000156_110 Hb_001148_110--Hb_000156_110 Hb_001942_010 Hb_001942_010 Hb_001148_110--Hb_001942_010 Hb_002042_180 Hb_002042_180 Hb_001148_110--Hb_002042_180 Hb_137222_010 Hb_137222_010 Hb_000816_240--Hb_137222_010 Hb_004096_210 Hb_004096_210 Hb_000816_240--Hb_004096_210 Hb_069696_020 Hb_069696_020 Hb_000816_240--Hb_069696_020 Hb_006075_030 Hb_006075_030 Hb_000816_240--Hb_006075_030 Hb_004220_010--Hb_001942_010 Hb_003581_230 Hb_003581_230 Hb_004220_010--Hb_003581_230 Hb_000904_120 Hb_000904_120 Hb_004220_010--Hb_000904_120 Hb_004220_010--Hb_084303_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.132545 1.00899 7.14125 5.86996 0.270041 0.0976982
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0382969 0.045202 0.028678 0.844119 7.83299

CAGE analysis