Hb_000976_410

Information

Type transcription factor
Description TF Family: EIL
Location Contig976: 335560-337293
Sequence    

Annotation

kegg
ID rcu:RCOM_1576950
description ETHYLENE-INSENSITIVE3 protein, putative
nr
ID XP_002513449.1
description ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
swissprot
ID O23116
description ETHYLENE INSENSITIVE 3-like 3 protein OS=Arabidopsis thaliana GN=EIL3 PE=1 SV=1
trembl
ID B9RI80
description ETHYLENE-INSENSITIVE3 protein, putative OS=Ricinus communis GN=RCOM_1576950 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene insensitive 3-like 3 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64102: 334695-337607
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_410 0.0 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
2 Hb_000035_320 0.0623181872 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Jatropha curcas]
3 Hb_000671_050 0.0674351865 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
4 Hb_005490_030 0.0736984031 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
5 Hb_000172_290 0.0762038465 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
6 Hb_004218_110 0.078740478 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
7 Hb_148644_010 0.0796022491 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
8 Hb_000477_060 0.0830725999 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
9 Hb_000041_050 0.0837211049 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
10 Hb_000656_110 0.084872845 - - nucleolysin tia-1, putative [Ricinus communis]
11 Hb_006429_010 0.08515857 - - PREDICTED: uncharacterized protein LOC105639724 [Jatropha curcas]
12 Hb_000700_110 0.085529319 - - Vesicle-associated membrane protein, putative [Ricinus communis]
13 Hb_000749_220 0.0859083708 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
14 Hb_003092_030 0.0860308016 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
15 Hb_002477_330 0.0872578058 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
16 Hb_092337_010 0.0885321552 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
17 Hb_001344_010 0.0888333509 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
18 Hb_000003_250 0.0897295771 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
19 Hb_000567_120 0.0910962717 - - PREDICTED: transcription factor IIIB 50 kDa subunit-like [Jatropha curcas]
20 Hb_000258_270 0.0915582451 - - PREDICTED: cullin-3A [Jatropha curcas]

Gene co-expression network

sample Hb_000976_410 Hb_000976_410 Hb_000035_320 Hb_000035_320 Hb_000976_410--Hb_000035_320 Hb_000671_050 Hb_000671_050 Hb_000976_410--Hb_000671_050 Hb_005490_030 Hb_005490_030 Hb_000976_410--Hb_005490_030 Hb_000172_290 Hb_000172_290 Hb_000976_410--Hb_000172_290 Hb_004218_110 Hb_004218_110 Hb_000976_410--Hb_004218_110 Hb_148644_010 Hb_148644_010 Hb_000976_410--Hb_148644_010 Hb_000035_320--Hb_000671_050 Hb_000035_320--Hb_148644_010 Hb_002835_080 Hb_002835_080 Hb_000035_320--Hb_002835_080 Hb_001538_130 Hb_001538_130 Hb_000035_320--Hb_001538_130 Hb_004032_150 Hb_004032_150 Hb_000035_320--Hb_004032_150 Hb_001100_060 Hb_001100_060 Hb_000671_050--Hb_001100_060 Hb_000876_070 Hb_000876_070 Hb_000671_050--Hb_000876_070 Hb_004724_080 Hb_004724_080 Hb_000671_050--Hb_004724_080 Hb_002105_040 Hb_002105_040 Hb_000671_050--Hb_002105_040 Hb_001009_170 Hb_001009_170 Hb_005490_030--Hb_001009_170 Hb_001344_010 Hb_001344_010 Hb_005490_030--Hb_001344_010 Hb_023001_060 Hb_023001_060 Hb_005490_030--Hb_023001_060 Hb_005490_030--Hb_000172_290 Hb_000749_220 Hb_000749_220 Hb_005490_030--Hb_000749_220 Hb_005054_100 Hb_005054_100 Hb_005490_030--Hb_005054_100 Hb_054865_150 Hb_054865_150 Hb_000172_290--Hb_054865_150 Hb_000254_090 Hb_000254_090 Hb_000172_290--Hb_000254_090 Hb_026198_070 Hb_026198_070 Hb_000172_290--Hb_026198_070 Hb_002685_210 Hb_002685_210 Hb_000172_290--Hb_002685_210 Hb_006478_020 Hb_006478_020 Hb_000172_290--Hb_006478_020 Hb_001971_010 Hb_001971_010 Hb_000172_290--Hb_001971_010 Hb_002759_060 Hb_002759_060 Hb_004218_110--Hb_002759_060 Hb_025240_040 Hb_025240_040 Hb_004218_110--Hb_025240_040 Hb_001369_690 Hb_001369_690 Hb_004218_110--Hb_001369_690 Hb_004254_120 Hb_004254_120 Hb_004218_110--Hb_004254_120 Hb_000120_460 Hb_000120_460 Hb_004218_110--Hb_000120_460 Hb_002005_020 Hb_002005_020 Hb_004218_110--Hb_002005_020 Hb_148644_010--Hb_002835_080 Hb_000700_110 Hb_000700_110 Hb_148644_010--Hb_000700_110 Hb_148644_010--Hb_004032_150 Hb_002477_330 Hb_002477_330 Hb_148644_010--Hb_002477_330 Hb_003195_070 Hb_003195_070 Hb_148644_010--Hb_003195_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7919 6.86363 3.69225 12.5639 7.65595 16.3406
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.6199 13.3726 19.195 9.28687 9.81548

CAGE analysis