Hb_000976_430

Information

Type transcription factor
Description TF Family: Jumonji
Location Contig976: 341353-344813
Sequence    

Annotation

kegg
ID rcu:RCOM_1576970
description transcription factor, putative (EC:1.14.11.16)
nr
ID XP_012092780.1
description PREDICTED: putative lysine-specific demethylase JMJD5 [Jatropha curcas]
swissprot
ID Q8RWR1
description Putative lysine-specific demethylase JMJD5 OS=Arabidopsis thaliana GN=JMJD5 PE=2 SV=1
trembl
ID B9RI82
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1576970 PE=4 SV=1
Gene Ontology
ID GO:0004597
description lysine-specific demethylase jmjd5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64103: 341552-343190 , PASA_asmbl_64104: 343397-344723
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_430 0.0 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJD5 [Jatropha curcas]
2 Hb_000504_140 0.0711625118 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 26, chloroplastic-like [Jatropha curcas]
3 Hb_002374_100 0.0737256217 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
4 Hb_002499_040 0.0913104286 - - PREDICTED: probable serine/threonine-protein kinase GCN2 isoform X2 [Jatropha curcas]
5 Hb_001818_090 0.0936767542 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005539_280 0.094301704 - - PREDICTED: uncharacterized protein LOC105644562 [Jatropha curcas]
7 Hb_001221_210 0.0943680985 - - thiF family protein [Populus trichocarpa]
8 Hb_031340_050 0.0967395711 - - PREDICTED: tropinone reductase 1-like isoform X1 [Jatropha curcas]
9 Hb_001633_050 0.0972150736 - - PREDICTED: histone H2A.Z-specific chaperone CHZ1 [Jatropha curcas]
10 Hb_000771_120 0.0981188218 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
11 Hb_002830_030 0.0984192729 - - PREDICTED: CDK5RAP3-like protein [Jatropha curcas]
12 Hb_000028_590 0.0992914073 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
13 Hb_004070_020 0.0993392149 - - rhythmically-expressed protein 2 protein, putative [Ricinus communis]
14 Hb_001726_020 0.1011698961 - - PREDICTED: endophilin-A1 [Jatropha curcas]
15 Hb_010422_060 0.1039473127 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
16 Hb_000137_090 0.1040902255 - - PREDICTED: HAUS augmin-like complex subunit 3 [Vitis vinifera]
17 Hb_006400_030 0.1041518405 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
18 Hb_034482_020 0.1042160089 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
19 Hb_000679_010 0.1046519729 - - PREDICTED: uncharacterized protein LOC105637663 [Jatropha curcas]
20 Hb_000010_460 0.1058501015 - - hypothetical protein EUGRSUZ_B001502, partial [Eucalyptus grandis]

Gene co-expression network

sample Hb_000976_430 Hb_000976_430 Hb_000504_140 Hb_000504_140 Hb_000976_430--Hb_000504_140 Hb_002374_100 Hb_002374_100 Hb_000976_430--Hb_002374_100 Hb_002499_040 Hb_002499_040 Hb_000976_430--Hb_002499_040 Hb_001818_090 Hb_001818_090 Hb_000976_430--Hb_001818_090 Hb_005539_280 Hb_005539_280 Hb_000976_430--Hb_005539_280 Hb_001221_210 Hb_001221_210 Hb_000976_430--Hb_001221_210 Hb_000504_140--Hb_005539_280 Hb_001758_100 Hb_001758_100 Hb_000504_140--Hb_001758_100 Hb_005779_060 Hb_005779_060 Hb_000504_140--Hb_005779_060 Hb_001633_050 Hb_001633_050 Hb_000504_140--Hb_001633_050 Hb_000317_240 Hb_000317_240 Hb_000504_140--Hb_000317_240 Hb_005618_170 Hb_005618_170 Hb_000504_140--Hb_005618_170 Hb_010422_060 Hb_010422_060 Hb_002374_100--Hb_010422_060 Hb_001014_040 Hb_001014_040 Hb_002374_100--Hb_001014_040 Hb_022181_020 Hb_022181_020 Hb_002374_100--Hb_022181_020 Hb_005183_120 Hb_005183_120 Hb_002374_100--Hb_005183_120 Hb_000010_460 Hb_000010_460 Hb_002374_100--Hb_000010_460 Hb_000757_060 Hb_000757_060 Hb_002499_040--Hb_000757_060 Hb_000538_270 Hb_000538_270 Hb_002499_040--Hb_000538_270 Hb_002499_040--Hb_000504_140 Hb_000556_160 Hb_000556_160 Hb_002499_040--Hb_000556_160 Hb_002686_030 Hb_002686_030 Hb_002499_040--Hb_002686_030 Hb_001226_040 Hb_001226_040 Hb_002499_040--Hb_001226_040 Hb_061090_010 Hb_061090_010 Hb_001818_090--Hb_061090_010 Hb_003032_040 Hb_003032_040 Hb_001818_090--Hb_003032_040 Hb_004109_090 Hb_004109_090 Hb_001818_090--Hb_004109_090 Hb_005663_060 Hb_005663_060 Hb_001818_090--Hb_005663_060 Hb_007441_120 Hb_007441_120 Hb_001818_090--Hb_007441_120 Hb_000579_140 Hb_000579_140 Hb_001818_090--Hb_000579_140 Hb_001726_020 Hb_001726_020 Hb_005539_280--Hb_001726_020 Hb_000250_060 Hb_000250_060 Hb_005539_280--Hb_000250_060 Hb_058999_020 Hb_058999_020 Hb_005539_280--Hb_058999_020 Hb_005539_280--Hb_001633_050 Hb_005539_280--Hb_005779_060 Hb_001221_210--Hb_001633_050 Hb_002995_020 Hb_002995_020 Hb_001221_210--Hb_002995_020 Hb_000020_060 Hb_000020_060 Hb_001221_210--Hb_000020_060 Hb_004116_190 Hb_004116_190 Hb_001221_210--Hb_004116_190 Hb_000329_200 Hb_000329_200 Hb_001221_210--Hb_000329_200 Hb_001504_110 Hb_001504_110 Hb_001221_210--Hb_001504_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.10748 2.55889 5.00063 2.48959 5.50222 4.59709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.60199 6.35175 7.98532 7.05541 2.91581

CAGE analysis