Hb_000977_010

Information

Type -
Description -
Location Contig977: 5154-8811
Sequence    

Annotation

kegg
ID rcu:RCOM_1076590
description endo-1,4-beta-glucanase, putative (EC:3.2.1.4)
nr
ID XP_002514768.1
description endo-1,4-beta-glucanase, putative [Ricinus communis]
swissprot
ID O04478
description Endoglucanase 7 OS=Arabidopsis thaliana GN=KOR2 PE=2 SV=1
trembl
ID B9RLZ9
description Endoglucanase OS=Ricinus communis GN=RCOM_1076590 PE=3 SV=1
Gene Ontology
ID GO:0008810
description endoglucanase 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64142: 7069-7543 , PASA_asmbl_64143: 7736-8789
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000977_010 0.0 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
2 Hb_000313_370 0.1071454293 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_002903_130 0.1152425786 - - epoxide hydrolase, putative [Ricinus communis]
4 Hb_000362_110 0.1352502939 - - PREDICTED: uncharacterized protein LOC104612097 isoform X2 [Nelumbo nucifera]
5 Hb_001351_040 0.1478872487 - - PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic-like [Jatropha curcas]
6 Hb_000189_120 0.1527013075 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
7 Hb_001584_010 0.1626429369 - - kelch repeat protein, putative [Ricinus communis]
8 Hb_000022_180 0.1655010732 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
9 Hb_003640_030 0.1658346404 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
10 Hb_007618_010 0.1672189916 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
11 Hb_008175_030 0.1680475999 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
12 Hb_001946_150 0.1779543239 - - conserved hypothetical protein [Ricinus communis]
13 Hb_057079_020 0.1784698206 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000097_040 0.1817520736 transcription factor TF Family: MYB myb domain protein [Hevea brasiliensis]
15 Hb_048848_010 0.182083851 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
16 Hb_000778_020 0.1825443682 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
17 Hb_000083_130 0.1832026501 - - hypothetical protein RCOM_0884570 [Ricinus communis]
18 Hb_003517_020 0.1838523141 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 3-like [Jatropha curcas]
19 Hb_001369_160 0.1843638039 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
20 Hb_003576_050 0.1845840929 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000977_010 Hb_000977_010 Hb_000313_370 Hb_000313_370 Hb_000977_010--Hb_000313_370 Hb_002903_130 Hb_002903_130 Hb_000977_010--Hb_002903_130 Hb_000362_110 Hb_000362_110 Hb_000977_010--Hb_000362_110 Hb_001351_040 Hb_001351_040 Hb_000977_010--Hb_001351_040 Hb_000189_120 Hb_000189_120 Hb_000977_010--Hb_000189_120 Hb_001584_010 Hb_001584_010 Hb_000977_010--Hb_001584_010 Hb_003517_020 Hb_003517_020 Hb_000313_370--Hb_003517_020 Hb_003576_050 Hb_003576_050 Hb_000313_370--Hb_003576_050 Hb_002030_170 Hb_002030_170 Hb_000313_370--Hb_002030_170 Hb_001946_150 Hb_001946_150 Hb_000313_370--Hb_001946_150 Hb_000313_370--Hb_000362_110 Hb_020178_060 Hb_020178_060 Hb_002903_130--Hb_020178_060 Hb_002903_130--Hb_001946_150 Hb_003640_030 Hb_003640_030 Hb_002903_130--Hb_003640_030 Hb_000097_040 Hb_000097_040 Hb_002903_130--Hb_000097_040 Hb_002903_130--Hb_000362_110 Hb_006717_070 Hb_006717_070 Hb_000362_110--Hb_006717_070 Hb_000395_220 Hb_000395_220 Hb_000362_110--Hb_000395_220 Hb_001780_150 Hb_001780_150 Hb_000362_110--Hb_001780_150 Hb_001799_190 Hb_001799_190 Hb_000362_110--Hb_001799_190 Hb_007426_140 Hb_007426_140 Hb_000362_110--Hb_007426_140 Hb_010398_010 Hb_010398_010 Hb_001351_040--Hb_010398_010 Hb_000315_030 Hb_000315_030 Hb_001351_040--Hb_000315_030 Hb_048848_010 Hb_048848_010 Hb_001351_040--Hb_048848_010 Hb_003384_070 Hb_003384_070 Hb_001351_040--Hb_003384_070 Hb_001351_040--Hb_003640_030 Hb_000189_120--Hb_001584_010 Hb_000778_020 Hb_000778_020 Hb_000189_120--Hb_000778_020 Hb_008175_030 Hb_008175_030 Hb_000189_120--Hb_008175_030 Hb_010253_020 Hb_010253_020 Hb_000189_120--Hb_010253_020 Hb_057079_020 Hb_057079_020 Hb_000189_120--Hb_057079_020 Hb_000007_160 Hb_000007_160 Hb_000189_120--Hb_000007_160 Hb_001584_010--Hb_008175_030 Hb_003299_010 Hb_003299_010 Hb_001584_010--Hb_003299_010 Hb_001584_010--Hb_000778_020 Hb_001584_010--Hb_000007_160 Hb_003525_020 Hb_003525_020 Hb_001584_010--Hb_003525_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.169444 1.77461 0.297416 0.611497 0.451518 0.503673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.037572 0.0443466 0.0281463 2.08476 0.345178

CAGE analysis