Hb_000977_070

Information

Type -
Description -
Location Contig977: 39396-43549
Sequence    

Annotation

kegg
ID pop:POPTR_0008s07870g
description POPTRDRAFT_564130; hypothetical protein
nr
ID XP_012078911.1
description PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
swissprot
ID Q84W55
description Type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 OS=Arabidopsis thaliana GN=FRA3 PE=1 SV=2
trembl
ID A0A067KBT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13413 PE=4 SV=1
Gene Ontology
ID GO:0016787
description type ii inositol -trisphosphate 5-phosphatase fra3 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64146: 39438-39827
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000977_070 0.0 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
2 Hb_001736_040 0.0678921578 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
3 Hb_001141_330 0.07101684 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]
4 Hb_001488_330 0.0757125515 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
5 Hb_000827_070 0.0767201247 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
6 Hb_000152_820 0.0768508699 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
7 Hb_000317_020 0.0807364972 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
8 Hb_000661_050 0.0813589157 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
9 Hb_002477_030 0.0823540344 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105631404 isoform X1 [Jatropha curcas]
10 Hb_005188_050 0.0829330122 - - PREDICTED: DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
11 Hb_002026_100 0.0832270959 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X2 [Jatropha curcas]
12 Hb_000236_100 0.0836051049 - - Dynein alpha chain, flagellar outer arm [Gossypium arboreum]
13 Hb_001516_100 0.0866776437 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
14 Hb_012634_010 0.0869998108 - - PREDICTED: uncharacterized protein LOC105110292 [Populus euphratica]
15 Hb_002810_020 0.0872131867 - - PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Jatropha curcas]
16 Hb_001019_230 0.0874143257 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Jatropha curcas]
17 Hb_000776_110 0.0878356641 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
18 Hb_006332_020 0.0879785099 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
19 Hb_000421_260 0.0881910336 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
20 Hb_002027_260 0.0882589501 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]

Gene co-expression network

sample Hb_000977_070 Hb_000977_070 Hb_001736_040 Hb_001736_040 Hb_000977_070--Hb_001736_040 Hb_001141_330 Hb_001141_330 Hb_000977_070--Hb_001141_330 Hb_001488_330 Hb_001488_330 Hb_000977_070--Hb_001488_330 Hb_000827_070 Hb_000827_070 Hb_000977_070--Hb_000827_070 Hb_000152_820 Hb_000152_820 Hb_000977_070--Hb_000152_820 Hb_000317_020 Hb_000317_020 Hb_000977_070--Hb_000317_020 Hb_000661_050 Hb_000661_050 Hb_001736_040--Hb_000661_050 Hb_002477_030 Hb_002477_030 Hb_001736_040--Hb_002477_030 Hb_001736_040--Hb_000317_020 Hb_001736_040--Hb_000152_820 Hb_001736_040--Hb_000827_070 Hb_002026_110 Hb_002026_110 Hb_001141_330--Hb_002026_110 Hb_004324_280 Hb_004324_280 Hb_001141_330--Hb_004324_280 Hb_005307_030 Hb_005307_030 Hb_001141_330--Hb_005307_030 Hb_000236_100 Hb_000236_100 Hb_001141_330--Hb_000236_100 Hb_000340_510 Hb_000340_510 Hb_001141_330--Hb_000340_510 Hb_006332_020 Hb_006332_020 Hb_001488_330--Hb_006332_020 Hb_000022_250 Hb_000022_250 Hb_001488_330--Hb_000022_250 Hb_000554_020 Hb_000554_020 Hb_001488_330--Hb_000554_020 Hb_000032_290 Hb_000032_290 Hb_001488_330--Hb_000032_290 Hb_004600_040 Hb_004600_040 Hb_001488_330--Hb_004600_040 Hb_005188_050 Hb_005188_050 Hb_000827_070--Hb_005188_050 Hb_045793_010 Hb_045793_010 Hb_000827_070--Hb_045793_010 Hb_000487_290 Hb_000487_290 Hb_000827_070--Hb_000487_290 Hb_000827_070--Hb_002477_030 Hb_120327_010 Hb_120327_010 Hb_000827_070--Hb_120327_010 Hb_010175_020 Hb_010175_020 Hb_000152_820--Hb_010175_020 Hb_000152_820--Hb_000317_020 Hb_007757_110 Hb_007757_110 Hb_000152_820--Hb_007757_110 Hb_000776_110 Hb_000776_110 Hb_000152_820--Hb_000776_110 Hb_001269_550 Hb_001269_550 Hb_000152_820--Hb_001269_550 Hb_002876_110 Hb_002876_110 Hb_000317_020--Hb_002876_110 Hb_001975_160 Hb_001975_160 Hb_000317_020--Hb_001975_160 Hb_000317_020--Hb_000661_050 Hb_000317_020--Hb_004600_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.53471 2.82524 0.856394 0.801405 3.81813 4.17355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.4555 3.63033 3.36574 1.73439 1.51759

CAGE analysis