Hb_000977_110

Information

Type -
Description -
Location Contig977: 79435-92238
Sequence    

Annotation

kegg
ID rcu:RCOM_1076740
description leucine zipper-ef-hand containing transmembrane protein, putative
nr
ID XP_012078903.1
description PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial [Jatropha curcas]
swissprot
ID Q5ZK33
description LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Gallus gallus GN=LETM1 PE=2 SV=1
trembl
ID A0A067KJP1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13410 PE=4 SV=1
Gene Ontology
ID GO:0005739
description letm1 and ef-hand domain-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64152: 79516-92164
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000977_110 0.0 - - PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial [Jatropha curcas]
2 Hb_001486_180 0.0753570586 - - hypothetical protein B456_007G260200 [Gossypium raimondii]
3 Hb_003291_010 0.0757993919 - - ATP-dependent protease La, putative [Ricinus communis]
4 Hb_000976_300 0.0765999413 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
5 Hb_000999_050 0.0851040227 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
6 Hb_004607_050 0.0917431486 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
7 Hb_004837_130 0.0949051339 - - PREDICTED: armadillo repeat-containing protein 8 [Jatropha curcas]
8 Hb_062135_030 0.0957885505 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
9 Hb_006615_020 0.0958288345 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
10 Hb_005183_120 0.0978576592 - - protein translocase, putative [Ricinus communis]
11 Hb_000015_040 0.0978909779 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
12 Hb_002799_070 0.0984351832 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
13 Hb_029510_050 0.1007800511 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
14 Hb_009486_140 0.1012746161 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
15 Hb_002481_080 0.102317297 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
16 Hb_002496_010 0.1030740207 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
17 Hb_001357_020 0.1033414294 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
18 Hb_001902_140 0.1035563771 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
19 Hb_001619_070 0.1036432081 - - PREDICTED: uncharacterized protein LOC103503585 [Cucumis melo]
20 Hb_002518_260 0.1039849897 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]

Gene co-expression network

sample Hb_000977_110 Hb_000977_110 Hb_001486_180 Hb_001486_180 Hb_000977_110--Hb_001486_180 Hb_003291_010 Hb_003291_010 Hb_000977_110--Hb_003291_010 Hb_000976_300 Hb_000976_300 Hb_000977_110--Hb_000976_300 Hb_000999_050 Hb_000999_050 Hb_000977_110--Hb_000999_050 Hb_004607_050 Hb_004607_050 Hb_000977_110--Hb_004607_050 Hb_004837_130 Hb_004837_130 Hb_000977_110--Hb_004837_130 Hb_001486_180--Hb_003291_010 Hb_001486_180--Hb_000999_050 Hb_006615_020 Hb_006615_020 Hb_001486_180--Hb_006615_020 Hb_001486_180--Hb_004607_050 Hb_003688_150 Hb_003688_150 Hb_001486_180--Hb_003688_150 Hb_003142_020 Hb_003142_020 Hb_003291_010--Hb_003142_020 Hb_001318_270 Hb_001318_270 Hb_003291_010--Hb_001318_270 Hb_000227_120 Hb_000227_120 Hb_003291_010--Hb_000227_120 Hb_003291_010--Hb_003688_150 Hb_000028_480 Hb_000028_480 Hb_000976_300--Hb_000028_480 Hb_002496_010 Hb_002496_010 Hb_000976_300--Hb_002496_010 Hb_001357_020 Hb_001357_020 Hb_000976_300--Hb_001357_020 Hb_002518_260 Hb_002518_260 Hb_000976_300--Hb_002518_260 Hb_002600_150 Hb_002600_150 Hb_000976_300--Hb_002600_150 Hb_000999_050--Hb_004607_050 Hb_004994_220 Hb_004994_220 Hb_000999_050--Hb_004994_220 Hb_000999_050--Hb_004837_130 Hb_002740_180 Hb_002740_180 Hb_000999_050--Hb_002740_180 Hb_006938_080 Hb_006938_080 Hb_000999_050--Hb_006938_080 Hb_001009_170 Hb_001009_170 Hb_000999_050--Hb_001009_170 Hb_000866_170 Hb_000866_170 Hb_004607_050--Hb_000866_170 Hb_005490_030 Hb_005490_030 Hb_004607_050--Hb_005490_030 Hb_002942_100 Hb_002942_100 Hb_004607_050--Hb_002942_100 Hb_000185_040 Hb_000185_040 Hb_004607_050--Hb_000185_040 Hb_004607_050--Hb_006938_080 Hb_000252_200 Hb_000252_200 Hb_004837_130--Hb_000252_200 Hb_004837_130--Hb_004607_050 Hb_002675_070 Hb_002675_070 Hb_004837_130--Hb_002675_070 Hb_000174_180 Hb_000174_180 Hb_004837_130--Hb_000174_180 Hb_011485_070 Hb_011485_070 Hb_004837_130--Hb_011485_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.6264 17.6553 12.631 20.235 16.2315 20.8319
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.689 20.2385 40.3742 32.0521 27.6402

CAGE analysis