Hb_000977_140

Information

Type -
Description -
Location Contig977: 121778-122988
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012488101.1
description PREDICTED: uncharacterized protein LOC105801335 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000977_140 0.0 - - PREDICTED: uncharacterized protein LOC105801335 [Gossypium raimondii]
2 Hb_044662_040 0.1090171943 - - -
3 Hb_007992_030 0.1164214013 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
4 Hb_178345_010 0.1175637755 - - hypothetical protein PHAVU_004G084200g [Phaseolus vulgaris]
5 Hb_000183_070 0.1179174003 - - -
6 Hb_001437_300 0.1189708019 - - -
7 Hb_000038_130 0.1202830468 - - -
8 Hb_002851_060 0.1254350291 - - Clathrin light chain 2 -like protein [Gossypium arboreum]
9 Hb_005015_010 0.1283286306 - - PREDICTED: programmed cell death protein 2-like [Jatropha curcas]
10 Hb_006501_150 0.1284423478 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001504_170 0.1289287182 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
12 Hb_001514_020 0.1290259384 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
13 Hb_004813_010 0.1315877437 - - nucleic acid binding protein, putative [Ricinus communis]
14 Hb_000175_520 0.1324093557 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_004374_010 0.1325772189 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
16 Hb_000847_070 0.1340014979 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
17 Hb_004502_030 0.1348456152 - - unknown [Populus trichocarpa]
18 Hb_004204_030 0.1385227545 - - unknown [Populus trichocarpa]
19 Hb_004096_170 0.1393021809 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
20 Hb_004607_120 0.1396075064 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]

Gene co-expression network

sample Hb_000977_140 Hb_000977_140 Hb_044662_040 Hb_044662_040 Hb_000977_140--Hb_044662_040 Hb_007992_030 Hb_007992_030 Hb_000977_140--Hb_007992_030 Hb_178345_010 Hb_178345_010 Hb_000977_140--Hb_178345_010 Hb_000183_070 Hb_000183_070 Hb_000977_140--Hb_000183_070 Hb_001437_300 Hb_001437_300 Hb_000977_140--Hb_001437_300 Hb_000038_130 Hb_000038_130 Hb_000977_140--Hb_000038_130 Hb_002851_060 Hb_002851_060 Hb_044662_040--Hb_002851_060 Hb_004607_120 Hb_004607_120 Hb_044662_040--Hb_004607_120 Hb_004502_030 Hb_004502_030 Hb_044662_040--Hb_004502_030 Hb_005271_070 Hb_005271_070 Hb_044662_040--Hb_005271_070 Hb_007632_250 Hb_007632_250 Hb_044662_040--Hb_007632_250 Hb_007992_030--Hb_004502_030 Hb_000847_070 Hb_000847_070 Hb_007992_030--Hb_000847_070 Hb_000345_560 Hb_000345_560 Hb_007992_030--Hb_000345_560 Hb_001514_020 Hb_001514_020 Hb_007992_030--Hb_001514_020 Hb_001493_100 Hb_001493_100 Hb_007992_030--Hb_001493_100 Hb_004813_010 Hb_004813_010 Hb_007992_030--Hb_004813_010 Hb_178345_010--Hb_002851_060 Hb_178345_010--Hb_044662_040 Hb_012395_100 Hb_012395_100 Hb_178345_010--Hb_012395_100 Hb_000175_520 Hb_000175_520 Hb_178345_010--Hb_000175_520 Hb_004375_060 Hb_004375_060 Hb_178345_010--Hb_004375_060 Hb_005714_040 Hb_005714_040 Hb_000183_070--Hb_005714_040 Hb_000183_070--Hb_001437_300 Hb_005015_010 Hb_005015_010 Hb_000183_070--Hb_005015_010 Hb_006501_150 Hb_006501_150 Hb_000183_070--Hb_006501_150 Hb_006452_190 Hb_006452_190 Hb_000183_070--Hb_006452_190 Hb_005389_140 Hb_005389_140 Hb_000183_070--Hb_005389_140 Hb_004374_010 Hb_004374_010 Hb_001437_300--Hb_004374_010 Hb_017098_030 Hb_017098_030 Hb_001437_300--Hb_017098_030 Hb_001437_300--Hb_006501_150 Hb_001437_300--Hb_007992_030 Hb_001437_300--Hb_001514_020 Hb_000714_020 Hb_000714_020 Hb_000038_130--Hb_000714_020 Hb_001635_220 Hb_001635_220 Hb_000038_130--Hb_001635_220 Hb_000117_040 Hb_000117_040 Hb_000038_130--Hb_000117_040 Hb_002078_430 Hb_002078_430 Hb_000038_130--Hb_002078_430 Hb_000590_090 Hb_000590_090 Hb_000038_130--Hb_000590_090 Hb_000038_130--Hb_004374_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.0062 2.07248 1.62632 0.765637 31.7009 24.1558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.8714 23.2511 5.10954 4.8326 1.38028

CAGE analysis