Hb_000977_210

Information

Type -
Description -
Location Contig977: 181745-186633
Sequence    

Annotation

kegg
ID rcu:RCOM_1076830
description chromatin assembly factor 1, subunit A, putative
nr
ID XP_002514782.1
description chromatin assembly factor 1, subunit A, putative [Ricinus communis]
swissprot
ID Q9SXY0
description Chromatin assembly factor 1 subunit FAS1 OS=Arabidopsis thaliana GN=FAS1 PE=1 SV=1
trembl
ID B9RM13
description Chromatin assembly factor 1, subunit A, putative OS=Ricinus communis GN=RCOM_1076830 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000977_210 0.0 - - chromatin assembly factor 1, subunit A, putative [Ricinus communis]
2 Hb_000345_170 0.0778884063 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
3 Hb_000093_080 0.0840851566 - - hypothetical protein POPTR_0008s09730g [Populus trichocarpa]
4 Hb_003794_010 0.0995489253 - - PREDICTED: uncharacterized protein LOC105641013 [Jatropha curcas]
5 Hb_002890_020 0.100271084 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
6 Hb_000510_200 0.1014665989 - - nucleotide binding protein, putative [Ricinus communis]
7 Hb_006915_070 0.1106967306 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
8 Hb_035755_010 0.1113310325 - - unknown [Populus trichocarpa]
9 Hb_005181_110 0.1115612738 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
10 Hb_001936_060 0.1116995255 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
11 Hb_012022_070 0.1144187079 - - RecName: Full=Probable pyridoxal 5'-phosphate synthase subunit PDX1; Short=PLP synthase subunit PDX1; AltName: Full=Ethylene-inducible protein HEVER [Hevea brasiliensis]
12 Hb_108216_040 0.1145208082 - - PREDICTED: protein arginine N-methyltransferase 2 [Jatropha curcas]
13 Hb_002681_070 0.1151091046 - - PREDICTED: uncharacterized protein LOC105633833 isoform X1 [Jatropha curcas]
14 Hb_000373_280 0.1155260084 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
15 Hb_001322_190 0.1161906106 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
16 Hb_005396_130 0.1165299182 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
17 Hb_008785_040 0.1172208578 - - PREDICTED: DNA repair protein UVH3 [Jatropha curcas]
18 Hb_012286_010 0.1184141838 - - PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Jatropha curcas]
19 Hb_000009_090 0.1193629565 transcription factor TF Family: bZIP G-box-binding factor, putative [Ricinus communis]
20 Hb_000207_310 0.1194431395 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]

Gene co-expression network

sample Hb_000977_210 Hb_000977_210 Hb_000345_170 Hb_000345_170 Hb_000977_210--Hb_000345_170 Hb_000093_080 Hb_000093_080 Hb_000977_210--Hb_000093_080 Hb_003794_010 Hb_003794_010 Hb_000977_210--Hb_003794_010 Hb_002890_020 Hb_002890_020 Hb_000977_210--Hb_002890_020 Hb_000510_200 Hb_000510_200 Hb_000977_210--Hb_000510_200 Hb_006915_070 Hb_006915_070 Hb_000977_210--Hb_006915_070 Hb_000345_170--Hb_002890_020 Hb_154745_010 Hb_154745_010 Hb_000345_170--Hb_154745_010 Hb_156973_010 Hb_156973_010 Hb_000345_170--Hb_156973_010 Hb_000345_170--Hb_006915_070 Hb_002527_030 Hb_002527_030 Hb_000345_170--Hb_002527_030 Hb_023386_040 Hb_023386_040 Hb_000345_170--Hb_023386_040 Hb_000093_080--Hb_000345_170 Hb_007026_030 Hb_007026_030 Hb_000093_080--Hb_007026_030 Hb_108216_040 Hb_108216_040 Hb_000093_080--Hb_108216_040 Hb_000184_110 Hb_000184_110 Hb_000093_080--Hb_000184_110 Hb_002174_060 Hb_002174_060 Hb_000093_080--Hb_002174_060 Hb_000160_210 Hb_000160_210 Hb_003794_010--Hb_000160_210 Hb_000009_090 Hb_000009_090 Hb_003794_010--Hb_000009_090 Hb_007007_060 Hb_007007_060 Hb_003794_010--Hb_007007_060 Hb_001390_110 Hb_001390_110 Hb_003794_010--Hb_001390_110 Hb_007904_120 Hb_007904_120 Hb_003794_010--Hb_007904_120 Hb_002909_050 Hb_002909_050 Hb_003794_010--Hb_002909_050 Hb_000207_310 Hb_000207_310 Hb_002890_020--Hb_000207_310 Hb_002205_040 Hb_002205_040 Hb_002890_020--Hb_002205_040 Hb_000029_130 Hb_000029_130 Hb_002890_020--Hb_000029_130 Hb_016898_010 Hb_016898_010 Hb_002890_020--Hb_016898_010 Hb_003952_150 Hb_003952_150 Hb_002890_020--Hb_003952_150 Hb_000072_150 Hb_000072_150 Hb_000510_200--Hb_000072_150 Hb_002893_150 Hb_002893_150 Hb_000510_200--Hb_002893_150 Hb_002798_040 Hb_002798_040 Hb_000510_200--Hb_002798_040 Hb_000429_120 Hb_000429_120 Hb_000510_200--Hb_000429_120 Hb_000100_070 Hb_000100_070 Hb_000510_200--Hb_000100_070 Hb_000046_440 Hb_000046_440 Hb_000510_200--Hb_000046_440 Hb_000034_040 Hb_000034_040 Hb_006915_070--Hb_000034_040 Hb_002681_070 Hb_002681_070 Hb_006915_070--Hb_002681_070 Hb_000116_180 Hb_000116_180 Hb_006915_070--Hb_000116_180 Hb_008785_040 Hb_008785_040 Hb_006915_070--Hb_008785_040 Hb_000856_110 Hb_000856_110 Hb_006915_070--Hb_000856_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.454928 0.128289 0.0916153 0.0906284 0.264098 0.305273
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.190145 0.213716 0.161312 0.187385 0.314463

CAGE analysis