Hb_000977_260

Information

Type -
Description -
Location Contig977: 225391-227806
Sequence    

Annotation

kegg
ID cic:CICLE_v10013460mg
description hypothetical protein
nr
ID KDO37843.1
description hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID A0A067D4V7
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g047084mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64178: 225275-225625
cDNA
(Sanger)
(ID:Location)		 019_E13r.ab1: 224092-224718 , 046_F04r.ab1: 224135-224867

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000977_260 0.0 - - hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]
2 Hb_003251_010 0.0232154197 - - hypothetical protein MIMGU_mgv1a025126mg [Erythranthe guttata]
3 Hb_003208_010 0.0232487386 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
4 Hb_000893_040 0.0273886588 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
5 Hb_000398_110 0.0379278697 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
6 Hb_008489_030 0.0417509251 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
7 Hb_020859_010 0.0441781751 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X6 [Populus euphratica]
8 Hb_027751_070 0.0514803228 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
9 Hb_000282_110 0.0538200596 transcription factor TF Family: C2C2-GATA hypothetical protein POPTR_0006s24560g [Populus trichocarpa]
10 Hb_000083_010 0.0539586453 - - -
11 Hb_015981_010 0.055035753 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_020805_090 0.0591581361 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
13 Hb_004150_020 0.0599121125 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
14 Hb_013818_020 0.06174563 - - hypothetical protein POPTR_0005s21070g [Populus trichocarpa]
15 Hb_004855_030 0.0622695645 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
16 Hb_003053_090 0.0673822244 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
17 Hb_002997_060 0.0678182968 - - hypothetical protein POPTR_0011s10730g [Populus trichocarpa]
18 Hb_000349_150 0.0691826504 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
19 Hb_007416_250 0.0761415173 - - -
20 Hb_013405_240 0.0799018276 - - Hydroxyproline-rich glycoprotein family protein [Theobroma cacao]

Gene co-expression network

sample Hb_000977_260 Hb_000977_260 Hb_003251_010 Hb_003251_010 Hb_000977_260--Hb_003251_010 Hb_003208_010 Hb_003208_010 Hb_000977_260--Hb_003208_010 Hb_000893_040 Hb_000893_040 Hb_000977_260--Hb_000893_040 Hb_000398_110 Hb_000398_110 Hb_000977_260--Hb_000398_110 Hb_008489_030 Hb_008489_030 Hb_000977_260--Hb_008489_030 Hb_020859_010 Hb_020859_010 Hb_000977_260--Hb_020859_010 Hb_003251_010--Hb_003208_010 Hb_003251_010--Hb_000893_040 Hb_000282_110 Hb_000282_110 Hb_003251_010--Hb_000282_110 Hb_003251_010--Hb_008489_030 Hb_003251_010--Hb_000398_110 Hb_003208_010--Hb_000282_110 Hb_003208_010--Hb_000398_110 Hb_013818_020 Hb_013818_020 Hb_003208_010--Hb_013818_020 Hb_003208_010--Hb_000893_040 Hb_000893_040--Hb_008489_030 Hb_015981_010 Hb_015981_010 Hb_000893_040--Hb_015981_010 Hb_000893_040--Hb_020859_010 Hb_002997_060 Hb_002997_060 Hb_000893_040--Hb_002997_060 Hb_000083_010 Hb_000083_010 Hb_000398_110--Hb_000083_010 Hb_027751_070 Hb_027751_070 Hb_000398_110--Hb_027751_070 Hb_000398_110--Hb_000282_110 Hb_008489_030--Hb_015981_010 Hb_008489_030--Hb_002997_060 Hb_008489_030--Hb_020859_010 Hb_003053_090 Hb_003053_090 Hb_020859_010--Hb_003053_090 Hb_020859_010--Hb_015981_010 Hb_004150_020 Hb_004150_020 Hb_020859_010--Hb_004150_020 Hb_020859_010--Hb_027751_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.11823 0.0525574 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.853542

CAGE analysis