Hb_000977_290

Information

Type -
Description -
Location Contig977: 251232-258883
Sequence    

Annotation

kegg
ID rcu:RCOM_1077250
description UDP-galactose/UDP-N-acetylglucosamine transporter, putative
nr
ID XP_012085813.1
description PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
swissprot
ID Q9C5H6
description CMP-sialic acid transporter 3 OS=Arabidopsis thaliana GN=UTR6 PE=2 SV=1
trembl
ID A0A067K519
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18072 PE=4 SV=1
Gene Ontology
ID GO:0000139
description cmp-sialic acid transporter 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64181: 258085-258239 , PASA_asmbl_64182: 258582-258912
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000977_290 0.0 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
2 Hb_010984_020 0.07680546 - - Translation factor GUF1 like, chloroplastic [Glycine soja]
3 Hb_000959_300 0.1050434745 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
4 Hb_007192_020 0.1096640356 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
5 Hb_002488_010 0.1275806786 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
6 Hb_004710_020 0.1279646249 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
7 Hb_001140_180 0.1314643799 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
8 Hb_000866_070 0.1315933724 - - PREDICTED: LOW QUALITY PROTEIN: SKP1-like protein 21 [Jatropha curcas]
9 Hb_000562_100 0.1325052845 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
10 Hb_000270_710 0.1334400692 - - PREDICTED: WAT1-related protein At5g40240-like isoform X1 [Jatropha curcas]
11 Hb_002053_050 0.1346615515 - - Kinesin heavy chain, putative [Ricinus communis]
12 Hb_006006_060 0.1419487412 - - PREDICTED: triacylglycerol lipase 1 isoform X2 [Jatropha curcas]
13 Hb_000866_340 0.1422963789 - - DNA binding protein, putative [Ricinus communis]
14 Hb_002942_230 0.1427175255 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
15 Hb_006916_030 0.1429879553 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
16 Hb_000815_230 0.1430780362 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003849_160 0.1433952185 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
18 Hb_000167_040 0.1437042509 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
19 Hb_000964_170 0.1447722011 - - Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis]
20 Hb_000347_190 0.1475868569 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]

Gene co-expression network

sample Hb_000977_290 Hb_000977_290 Hb_010984_020 Hb_010984_020 Hb_000977_290--Hb_010984_020 Hb_000959_300 Hb_000959_300 Hb_000977_290--Hb_000959_300 Hb_007192_020 Hb_007192_020 Hb_000977_290--Hb_007192_020 Hb_002488_010 Hb_002488_010 Hb_000977_290--Hb_002488_010 Hb_004710_020 Hb_004710_020 Hb_000977_290--Hb_004710_020 Hb_001140_180 Hb_001140_180 Hb_000977_290--Hb_001140_180 Hb_010984_020--Hb_007192_020 Hb_006006_060 Hb_006006_060 Hb_010984_020--Hb_006006_060 Hb_010984_020--Hb_004710_020 Hb_010984_020--Hb_000959_300 Hb_000510_150 Hb_000510_150 Hb_010984_020--Hb_000510_150 Hb_000959_300--Hb_002488_010 Hb_001411_130 Hb_001411_130 Hb_000959_300--Hb_001411_130 Hb_001969_140 Hb_001969_140 Hb_000959_300--Hb_001969_140 Hb_002942_230 Hb_002942_230 Hb_000959_300--Hb_002942_230 Hb_003847_040 Hb_003847_040 Hb_000959_300--Hb_003847_040 Hb_000167_040 Hb_000167_040 Hb_000959_300--Hb_000167_040 Hb_000094_290 Hb_000094_290 Hb_007192_020--Hb_000094_290 Hb_007192_020--Hb_000959_300 Hb_000300_090 Hb_000300_090 Hb_007192_020--Hb_000300_090 Hb_009913_040 Hb_009913_040 Hb_007192_020--Hb_009913_040 Hb_000968_060 Hb_000968_060 Hb_002488_010--Hb_000968_060 Hb_000866_070 Hb_000866_070 Hb_002488_010--Hb_000866_070 Hb_012762_060 Hb_012762_060 Hb_002488_010--Hb_012762_060 Hb_003680_030 Hb_003680_030 Hb_002488_010--Hb_003680_030 Hb_002900_150 Hb_002900_150 Hb_002488_010--Hb_002900_150 Hb_000496_130 Hb_000496_130 Hb_004710_020--Hb_000496_130 Hb_000085_070 Hb_000085_070 Hb_004710_020--Hb_000085_070 Hb_000454_100 Hb_000454_100 Hb_004710_020--Hb_000454_100 Hb_002828_060 Hb_002828_060 Hb_004710_020--Hb_002828_060 Hb_004710_020--Hb_006006_060 Hb_001348_090 Hb_001348_090 Hb_004710_020--Hb_001348_090 Hb_029552_020 Hb_029552_020 Hb_001140_180--Hb_029552_020 Hb_001140_180--Hb_002828_060 Hb_001279_020 Hb_001279_020 Hb_001140_180--Hb_001279_020 Hb_000562_070 Hb_000562_070 Hb_001140_180--Hb_000562_070 Hb_001053_080 Hb_001053_080 Hb_001140_180--Hb_001053_080 Hb_001140_180--Hb_001411_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.19801 1.31437 4.07765 5.25866 1.07929 2.26482
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.464745 0.304714 0.19194 1.95825 5.30322

CAGE analysis