Hb_000977_300

Information

Type -
Description -
Location Contig977: 260360-282094
Sequence    

Annotation

kegg
ID mdm:103427777
description probable E3 ubiquitin-protein ligase ARI8
nr
ID XP_008364069.1
description PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
swissprot
ID Q8W468
description Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana GN=ARI8 PE=2 SV=1
trembl
ID B9RM26
description Protein ariadne-1, putative OS=Ricinus communis GN=RCOM_1077260 PE=4 SV=1
Gene Ontology
ID GO:0005488
description probable e3 ubiquitin-protein ligase ari8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64183: 260411-266689
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000977_300 0.0 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
2 Hb_004517_020 0.0420468157 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
3 Hb_000529_060 0.0456294295 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
4 Hb_000120_910 0.0484562903 - - plant ubiquilin, putative [Ricinus communis]
5 Hb_001171_030 0.05788473 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
6 Hb_000189_630 0.0579259656 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
7 Hb_000110_350 0.0643061947 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
8 Hb_002903_140 0.0648654376 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
9 Hb_000008_240 0.0659264948 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001584_350 0.0666749682 - - hypothetical protein JCGZ_23178 [Jatropha curcas]
11 Hb_004429_010 0.0669452439 - - calcineurin-like phosphoesterase [Manihot esculenta]
12 Hb_000046_600 0.0675782244 - - PREDICTED: cullin-1-like [Jatropha curcas]
13 Hb_005403_010 0.0683183795 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
14 Hb_000373_170 0.0685332814 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
15 Hb_001723_010 0.0688621371 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
16 Hb_000445_060 0.0689354719 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
17 Hb_000174_150 0.0693423048 - - stearoyl-acyl-carrier protein desaturase [Ricinus communis]
18 Hb_000996_020 0.0694463842 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
19 Hb_003142_040 0.0708657124 - - Sf3a3 [Gossypium arboreum]
20 Hb_002768_050 0.0720613926 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]

Gene co-expression network

sample Hb_000977_300 Hb_000977_300 Hb_004517_020 Hb_004517_020 Hb_000977_300--Hb_004517_020 Hb_000529_060 Hb_000529_060 Hb_000977_300--Hb_000529_060 Hb_000120_910 Hb_000120_910 Hb_000977_300--Hb_000120_910 Hb_001171_030 Hb_001171_030 Hb_000977_300--Hb_001171_030 Hb_000189_630 Hb_000189_630 Hb_000977_300--Hb_000189_630 Hb_000110_350 Hb_000110_350 Hb_000977_300--Hb_000110_350 Hb_004517_020--Hb_000120_910 Hb_001723_010 Hb_001723_010 Hb_004517_020--Hb_001723_010 Hb_000008_240 Hb_000008_240 Hb_004517_020--Hb_000008_240 Hb_000373_170 Hb_000373_170 Hb_004517_020--Hb_000373_170 Hb_004517_020--Hb_000110_350 Hb_000996_020 Hb_000996_020 Hb_000529_060--Hb_000996_020 Hb_000046_600 Hb_000046_600 Hb_000529_060--Hb_000046_600 Hb_005333_140 Hb_005333_140 Hb_000529_060--Hb_005333_140 Hb_011972_020 Hb_011972_020 Hb_000529_060--Hb_011972_020 Hb_000529_060--Hb_001171_030 Hb_027654_020 Hb_027654_020 Hb_000120_910--Hb_027654_020 Hb_000949_020 Hb_000949_020 Hb_000120_910--Hb_000949_020 Hb_000809_160 Hb_000809_160 Hb_000120_910--Hb_000809_160 Hb_000120_910--Hb_001723_010 Hb_003142_040 Hb_003142_040 Hb_001171_030--Hb_003142_040 Hb_002968_070 Hb_002968_070 Hb_001171_030--Hb_002968_070 Hb_001723_140 Hb_001723_140 Hb_001171_030--Hb_001723_140 Hb_001171_030--Hb_000189_630 Hb_000189_630--Hb_003142_040 Hb_000189_630--Hb_004517_020 Hb_000189_630--Hb_005333_140 Hb_005834_040 Hb_005834_040 Hb_000189_630--Hb_005834_040 Hb_170077_010 Hb_170077_010 Hb_000110_350--Hb_170077_010 Hb_000179_190 Hb_000179_190 Hb_000110_350--Hb_000179_190 Hb_003929_210 Hb_003929_210 Hb_000110_350--Hb_003929_210 Hb_002768_050 Hb_002768_050 Hb_000110_350--Hb_002768_050 Hb_000445_060 Hb_000445_060 Hb_000110_350--Hb_000445_060 Hb_000110_350--Hb_000996_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.91867 12.2651 10.2561 7.92835 5.70774 6.02837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.0086 2.67917 4.19864 7.32483 6.52904

CAGE analysis