Hb_000977_310

Information

Type -
Description -
Location Contig977: 282876-286293
Sequence    

Annotation

kegg
ID rcu:RCOM_1158460
description gamma-tubulin complex component, putative
nr
ID XP_012067054.1
description PREDICTED: gamma-tubulin complex component 2 isoform X4 [Jatropha curcas]
swissprot
ID Q9C5H9
description Gamma-tubulin complex component 2 OS=Arabidopsis thaliana GN=GCP2 PE=1 SV=1
trembl
ID A0A067LD97
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01852 PE=4 SV=1
Gene Ontology
ID GO:0015630
description gamma-tubulin complex component 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64185: 282760-285302
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000977_310 0.0 - - PREDICTED: gamma-tubulin complex component 2 isoform X4 [Jatropha curcas]
2 Hb_001040_160 0.0969838527 - - glutaredoxin, grx, putative [Ricinus communis]
3 Hb_050455_010 0.0970972931 - - PREDICTED: prosaposin isoform X2 [Jatropha curcas]
4 Hb_000568_040 0.0990476785 - - PREDICTED: mRNA-decapping enzyme subunit 2 [Jatropha curcas]
5 Hb_010298_010 0.100624661 - - PREDICTED: uncharacterized protein At2g02148 [Jatropha curcas]
6 Hb_110364_010 0.1030220598 - - gamma-tubulin complex component, putative [Ricinus communis]
7 Hb_000390_060 0.1034945894 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
8 Hb_001307_140 0.1039122624 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Jatropha curcas]
9 Hb_003494_240 0.1060326029 - - PREDICTED: uncharacterized protein LOC105644075 [Jatropha curcas]
10 Hb_008511_050 0.1082404791 - - PREDICTED: cyclase-associated protein 1 [Jatropha curcas]
11 Hb_000671_100 0.1085151276 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
12 Hb_000703_080 0.1085795069 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]
13 Hb_000017_340 0.109783258 - - PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
14 Hb_063047_010 0.1105060801 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
15 Hb_137403_010 0.1123285729 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
16 Hb_002023_020 0.1123660611 - - PREDICTED: aladin isoform X2 [Jatropha curcas]
17 Hb_007317_190 0.112391425 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
18 Hb_000307_200 0.1126555204 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
19 Hb_024714_030 0.1160286046 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
20 Hb_001454_060 0.1175183152 - - uncharacterized protein LOC100527252 [Glycine max]

Gene co-expression network

sample Hb_000977_310 Hb_000977_310 Hb_001040_160 Hb_001040_160 Hb_000977_310--Hb_001040_160 Hb_050455_010 Hb_050455_010 Hb_000977_310--Hb_050455_010 Hb_000568_040 Hb_000568_040 Hb_000977_310--Hb_000568_040 Hb_010298_010 Hb_010298_010 Hb_000977_310--Hb_010298_010 Hb_110364_010 Hb_110364_010 Hb_000977_310--Hb_110364_010 Hb_000390_060 Hb_000390_060 Hb_000977_310--Hb_000390_060 Hb_000316_030 Hb_000316_030 Hb_001040_160--Hb_000316_030 Hb_008714_020 Hb_008714_020 Hb_001040_160--Hb_008714_020 Hb_001609_010 Hb_001609_010 Hb_001040_160--Hb_001609_010 Hb_063047_010 Hb_063047_010 Hb_001040_160--Hb_063047_010 Hb_005635_010 Hb_005635_010 Hb_001040_160--Hb_005635_010 Hb_025012_010 Hb_025012_010 Hb_001040_160--Hb_025012_010 Hb_000069_160 Hb_000069_160 Hb_050455_010--Hb_000069_160 Hb_002982_040 Hb_002982_040 Hb_050455_010--Hb_002982_040 Hb_003847_080 Hb_003847_080 Hb_050455_010--Hb_003847_080 Hb_185830_020 Hb_185830_020 Hb_050455_010--Hb_185830_020 Hb_012305_050 Hb_012305_050 Hb_050455_010--Hb_012305_050 Hb_000849_070 Hb_000849_070 Hb_050455_010--Hb_000849_070 Hb_007317_190 Hb_007317_190 Hb_000568_040--Hb_007317_190 Hb_000568_040--Hb_001040_160 Hb_000017_340 Hb_000017_340 Hb_000568_040--Hb_000017_340 Hb_000370_030 Hb_000370_030 Hb_000568_040--Hb_000370_030 Hb_002067_150 Hb_002067_150 Hb_000568_040--Hb_002067_150 Hb_001307_140 Hb_001307_140 Hb_000568_040--Hb_001307_140 Hb_000671_100 Hb_000671_100 Hb_010298_010--Hb_000671_100 Hb_010261_020 Hb_010261_020 Hb_010298_010--Hb_010261_020 Hb_024714_030 Hb_024714_030 Hb_010298_010--Hb_024714_030 Hb_033642_020 Hb_033642_020 Hb_010298_010--Hb_033642_020 Hb_000307_200 Hb_000307_200 Hb_010298_010--Hb_000307_200 Hb_110364_010--Hb_001307_140 Hb_110364_010--Hb_063047_010 Hb_110364_010--Hb_001040_160 Hb_002341_030 Hb_002341_030 Hb_110364_010--Hb_002341_030 Hb_110364_010--Hb_005635_010 Hb_001871_040 Hb_001871_040 Hb_110364_010--Hb_001871_040 Hb_003434_060 Hb_003434_060 Hb_000390_060--Hb_003434_060 Hb_000230_330 Hb_000230_330 Hb_000390_060--Hb_000230_330 Hb_000120_500 Hb_000120_500 Hb_000390_060--Hb_000120_500 Hb_001584_110 Hb_001584_110 Hb_000390_060--Hb_001584_110 Hb_000034_050 Hb_000034_050 Hb_000390_060--Hb_000034_050 Hb_000390_060--Hb_000316_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.8589 30.3975 10.2365 24.2301 60.7601 118.865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.7071 24.034 44.1108 20.1182 8.98133

CAGE analysis