Hb_000979_010

Information

Type -
Description -
Location Contig979: 8845-9228
Sequence    

Annotation

kegg
ID pop:POPTR_0003s09020g
description hypothetical protein
nr
ID XP_011028185.1
description PREDICTED: uncharacterized protein LOC105128288 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9N2N3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s09020g PE=4 SV=1
Gene Ontology
ID GO:0009741
description PREDICTED: uncharacterized protein LOC105128288

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64290: 8635-9425
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000979_010 0.0 - - PREDICTED: uncharacterized protein LOC105128288 [Populus euphratica]
2 Hb_001367_010 0.1440305674 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
3 Hb_005618_060 0.1600990443 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
4 Hb_002570_010 0.1827190272 - - hypothetical protein JCGZ_25329 [Jatropha curcas]
5 Hb_091761_010 0.2041012643 - - Rhomboid protein, putative [Ricinus communis]
6 Hb_000640_140 0.2307728319 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002235_270 0.2332052102 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
8 Hb_000197_110 0.2340479241 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000359_300 0.2348225607 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g06470 [Zea mays]
10 Hb_000544_180 0.2396386061 - - PREDICTED: probable auxin efflux carrier component 1c isoform X1 [Jatropha curcas]
11 Hb_004657_090 0.2404751678 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
12 Hb_054436_010 0.2410974631 - - PREDICTED: uncharacterized protein LOC105638666 [Jatropha curcas]
13 Hb_177152_010 0.2482664168 - - glycosyl hydrolase family 38 family protein [Populus trichocarpa]
14 Hb_000869_060 0.2503971054 - - hypothetical protein L484_003245 [Morus notabilis]
15 Hb_000258_360 0.2517576604 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
16 Hb_000091_060 0.2536994571 - - PREDICTED: galactose oxidase [Jatropha curcas]
17 Hb_002783_250 0.2540890607 - - gibberellin-regulated protein 1-like precursor [Jatropha curcas]
18 Hb_065841_010 0.2541924889 - - hypothetical protein JCGZ_18376 [Jatropha curcas]
19 Hb_000424_080 0.2552018238 - - PREDICTED: endoglucanase 16 [Jatropha curcas]
20 Hb_004935_080 0.2568127024 - - AT3g13060/MGH6_17 [Arabidopsis thaliana]

Gene co-expression network

sample Hb_000979_010 Hb_000979_010 Hb_001367_010 Hb_001367_010 Hb_000979_010--Hb_001367_010 Hb_005618_060 Hb_005618_060 Hb_000979_010--Hb_005618_060 Hb_002570_010 Hb_002570_010 Hb_000979_010--Hb_002570_010 Hb_091761_010 Hb_091761_010 Hb_000979_010--Hb_091761_010 Hb_000640_140 Hb_000640_140 Hb_000979_010--Hb_000640_140 Hb_002235_270 Hb_002235_270 Hb_000979_010--Hb_002235_270 Hb_001367_010--Hb_002570_010 Hb_001367_010--Hb_091761_010 Hb_000200_070 Hb_000200_070 Hb_001367_010--Hb_000200_070 Hb_003449_060 Hb_003449_060 Hb_001367_010--Hb_003449_060 Hb_000197_110 Hb_000197_110 Hb_001367_010--Hb_000197_110 Hb_000139_120 Hb_000139_120 Hb_005618_060--Hb_000139_120 Hb_005618_060--Hb_001367_010 Hb_005618_060--Hb_002570_010 Hb_007765_070 Hb_007765_070 Hb_005618_060--Hb_007765_070 Hb_005618_060--Hb_091761_010 Hb_002570_010--Hb_091761_010 Hb_002570_010--Hb_000200_070 Hb_114638_010 Hb_114638_010 Hb_002570_010--Hb_114638_010 Hb_005843_160 Hb_005843_160 Hb_091761_010--Hb_005843_160 Hb_000091_060 Hb_000091_060 Hb_091761_010--Hb_000091_060 Hb_008511_060 Hb_008511_060 Hb_091761_010--Hb_008511_060 Hb_000424_080 Hb_000424_080 Hb_000640_140--Hb_000424_080 Hb_000033_070 Hb_000033_070 Hb_000640_140--Hb_000033_070 Hb_000359_300 Hb_000359_300 Hb_000640_140--Hb_000359_300 Hb_000640_140--Hb_001367_010 Hb_002265_030 Hb_002265_030 Hb_000640_140--Hb_002265_030 Hb_065841_010 Hb_065841_010 Hb_002235_270--Hb_065841_010 Hb_001001_050 Hb_001001_050 Hb_002235_270--Hb_001001_050 Hb_009102_020 Hb_009102_020 Hb_002235_270--Hb_009102_020 Hb_000311_030 Hb_000311_030 Hb_002235_270--Hb_000311_030 Hb_068569_010 Hb_068569_010 Hb_002235_270--Hb_068569_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
157.816 33.3017 90.205 241.077 116.747 153.915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.8846 1.69528 0.535521 1.099 28.7829

CAGE analysis