Hb_000979_050

Information

Type -
Description -
Location Contig979: 84953-85843
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000979_050 0.0 - - -
2 Hb_008092_140 0.1485888387 - - PREDICTED: uncharacterized protein LOC103636948 [Zea mays]
3 Hb_039305_010 0.1516741061 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
4 Hb_004917_050 0.1532054085 - - -
5 Hb_009467_030 0.1993266538 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
6 Hb_000067_020 0.2014650042 desease resistance Gene Name: NB-ARC PREDICTED: inactive disease resistance protein RPS4-like [Jatropha curcas]
7 Hb_001386_080 0.2035846361 - - hypothetical protein JCGZ_06052 [Jatropha curcas]
8 Hb_003773_030 0.2080449223 - - -
9 Hb_000008_260 0.2118470444 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001504_320 0.2185464022 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
11 Hb_007713_010 0.2225384849 - - hypothetical protein JCGZ_18011 [Jatropha curcas]
12 Hb_000395_060 0.2376884409 - - -
13 Hb_003837_020 0.2394319325 - - PREDICTED: uncharacterized protein LOC103710465 isoform X1 [Phoenix dactylifera]
14 Hb_001348_110 0.2403083116 - - PREDICTED: esterase-like [Jatropha curcas]
15 Hb_159085_010 0.2431547753 - - -
16 Hb_000804_030 0.2437924866 - - Protein C14orf111, putative [Ricinus communis]
17 Hb_001379_130 0.2456203873 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
18 Hb_002997_130 0.2460852795 - - -
19 Hb_028462_010 0.2461693611 - - PREDICTED: uncharacterized protein LOC101509514 [Cicer arietinum]
20 Hb_123098_010 0.2461699879 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000979_050 Hb_000979_050 Hb_008092_140 Hb_008092_140 Hb_000979_050--Hb_008092_140 Hb_039305_010 Hb_039305_010 Hb_000979_050--Hb_039305_010 Hb_004917_050 Hb_004917_050 Hb_000979_050--Hb_004917_050 Hb_009467_030 Hb_009467_030 Hb_000979_050--Hb_009467_030 Hb_000067_020 Hb_000067_020 Hb_000979_050--Hb_000067_020 Hb_001386_080 Hb_001386_080 Hb_000979_050--Hb_001386_080 Hb_008092_140--Hb_001386_080 Hb_002997_130 Hb_002997_130 Hb_008092_140--Hb_002997_130 Hb_028462_010 Hb_028462_010 Hb_008092_140--Hb_028462_010 Hb_123098_010 Hb_123098_010 Hb_008092_140--Hb_123098_010 Hb_004899_270 Hb_004899_270 Hb_008092_140--Hb_004899_270 Hb_000111_160 Hb_000111_160 Hb_008092_140--Hb_000111_160 Hb_039305_010--Hb_000067_020 Hb_000736_010 Hb_000736_010 Hb_039305_010--Hb_000736_010 Hb_039305_010--Hb_008092_140 Hb_003773_030 Hb_003773_030 Hb_039305_010--Hb_003773_030 Hb_159085_010 Hb_159085_010 Hb_039305_010--Hb_159085_010 Hb_004917_050--Hb_009467_030 Hb_000008_260 Hb_000008_260 Hb_004917_050--Hb_000008_260 Hb_102438_010 Hb_102438_010 Hb_004917_050--Hb_102438_010 Hb_004917_050--Hb_001386_080 Hb_004917_050--Hb_008092_140 Hb_009467_030--Hb_000008_260 Hb_009467_030--Hb_102438_010 Hb_007904_270 Hb_007904_270 Hb_009467_030--Hb_007904_270 Hb_009467_030--Hb_001386_080 Hb_000270_150 Hb_000270_150 Hb_000067_020--Hb_000270_150 Hb_000067_020--Hb_000736_010 Hb_000067_020--Hb_003773_030 Hb_000067_020--Hb_008092_140 Hb_002094_040 Hb_002094_040 Hb_001386_080--Hb_002094_040 Hb_001386_080--Hb_002997_130 Hb_001386_080--Hb_028462_010 Hb_001386_080--Hb_123098_010 Hb_001386_080--Hb_004899_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.11973 0.0572956
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.896442 0.938901 0 0.0491113 0

CAGE analysis