Hb_000979_060

Information

Type -
Description -
Location Contig979: 95826-100018
Sequence    

Annotation

kegg
ID pop:POPTR_0010s11910g
description POPTRDRAFT_658735; hypothetical protein
nr
ID XP_012479012.1
description PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Gossypium raimondii]
swissprot
ID Q9LQU4
description Protein PLANT CADMIUM RESISTANCE 2 OS=Arabidopsis thaliana GN=PCR2 PE=1 SV=1
trembl
ID A0A0D2NDM3
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G159200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64291: 95782-97200
cDNA
(Sanger)
(ID:Location)		 009_I15.ab1: 96290-97200

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000979_060 0.0 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Gossypium raimondii]
2 Hb_000684_100 0.0934969921 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
3 Hb_005194_020 0.0939742518 - - PREDICTED: UPF0553 protein-like isoform X1 [Jatropha curcas]
4 Hb_002311_480 0.094744812 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
5 Hb_000009_220 0.0981574424 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
6 Hb_001322_020 0.1037503991 - - PREDICTED: polycomb group protein VERNALIZATION 2-like isoform X2 [Populus euphratica]
7 Hb_000579_190 0.1101543503 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
8 Hb_000291_030 0.1124424267 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Eucalyptus grandis]
9 Hb_002478_040 0.1127796472 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 2C, putative [Ricinus communis]
10 Hb_001500_120 0.1140946738 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_000086_430 0.1148463844 - - hypothetical protein JCGZ_17649 [Jatropha curcas]
12 Hb_001005_020 0.1159880491 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
13 Hb_001863_140 0.1170982258 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
14 Hb_004635_030 0.1176174947 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
15 Hb_000011_050 0.1199670721 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
16 Hb_000048_080 0.122735917 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
17 Hb_006452_180 0.1243709606 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
18 Hb_011671_310 0.1250285258 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
19 Hb_010080_010 0.1258036467 - - PREDICTED: uncharacterized protein LOC105635247 [Jatropha curcas]
20 Hb_005977_030 0.1262474954 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]

Gene co-expression network

sample Hb_000979_060 Hb_000979_060 Hb_000684_100 Hb_000684_100 Hb_000979_060--Hb_000684_100 Hb_005194_020 Hb_005194_020 Hb_000979_060--Hb_005194_020 Hb_002311_480 Hb_002311_480 Hb_000979_060--Hb_002311_480 Hb_000009_220 Hb_000009_220 Hb_000979_060--Hb_000009_220 Hb_001322_020 Hb_001322_020 Hb_000979_060--Hb_001322_020 Hb_000579_190 Hb_000579_190 Hb_000979_060--Hb_000579_190 Hb_004125_060 Hb_004125_060 Hb_000684_100--Hb_004125_060 Hb_000684_100--Hb_000009_220 Hb_001369_030 Hb_001369_030 Hb_000684_100--Hb_001369_030 Hb_000086_430 Hb_000086_430 Hb_000684_100--Hb_000086_430 Hb_000062_360 Hb_000062_360 Hb_000684_100--Hb_000062_360 Hb_000951_100 Hb_000951_100 Hb_005194_020--Hb_000951_100 Hb_004635_030 Hb_004635_030 Hb_005194_020--Hb_004635_030 Hb_005194_020--Hb_002311_480 Hb_011671_310 Hb_011671_310 Hb_005194_020--Hb_011671_310 Hb_001005_020 Hb_001005_020 Hb_005194_020--Hb_001005_020 Hb_001500_120 Hb_001500_120 Hb_002311_480--Hb_001500_120 Hb_002311_480--Hb_011671_310 Hb_005977_030 Hb_005977_030 Hb_002311_480--Hb_005977_030 Hb_004943_030 Hb_004943_030 Hb_002311_480--Hb_004943_030 Hb_000048_080 Hb_000048_080 Hb_002311_480--Hb_000048_080 Hb_014231_020 Hb_014231_020 Hb_000009_220--Hb_014231_020 Hb_011915_040 Hb_011915_040 Hb_000009_220--Hb_011915_040 Hb_156635_020 Hb_156635_020 Hb_000009_220--Hb_156635_020 Hb_000009_220--Hb_000086_430 Hb_000959_220 Hb_000959_220 Hb_001322_020--Hb_000959_220 Hb_003470_040 Hb_003470_040 Hb_001322_020--Hb_003470_040 Hb_029695_080 Hb_029695_080 Hb_001322_020--Hb_029695_080 Hb_001322_020--Hb_000062_360 Hb_003506_030 Hb_003506_030 Hb_001322_020--Hb_003506_030 Hb_001322_020--Hb_014231_020 Hb_000579_190--Hb_001005_020 Hb_000375_290 Hb_000375_290 Hb_000579_190--Hb_000375_290 Hb_001558_060 Hb_001558_060 Hb_000579_190--Hb_001558_060 Hb_004236_030 Hb_004236_030 Hb_000579_190--Hb_004236_030 Hb_000579_190--Hb_004943_030 Hb_008695_090 Hb_008695_090 Hb_000579_190--Hb_008695_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.6374 45.4445 83.1531 22.0395 19.4921 12.112
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.9885 21.2254 20.0815 17.2737 13.2377

CAGE analysis