Hb_000979_080

Information

Type -
Description -
Location Contig979: 112838-113470
Sequence    

Annotation

kegg
ID pop:POPTR_0008s13190g
description POPTRDRAFT_419607; hypothetical protein
nr
ID XP_012072273.1
description PREDICTED: 21 kDa protein-like [Jatropha curcas]
swissprot
ID P17407
description 21 kDa protein OS=Daucus carota PE=2 SV=1
trembl
ID A0A067KPE8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04734 PE=4 SV=1
Gene Ontology
ID GO:0004857
description 21 kda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000979_080 0.0 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
2 Hb_000187_110 0.1015625118 - - PREDICTED: serine carboxypeptidase-like 7 [Jatropha curcas]
3 Hb_001002_090 0.1023360167 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
4 Hb_003768_100 0.1190744818 - - hypothetical protein JCGZ_19930 [Jatropha curcas]
5 Hb_003226_050 0.1196036886 - - Pectinesterase-3 precursor, putative [Ricinus communis]
6 Hb_055440_010 0.1245582227 - - protein binding protein, putative [Ricinus communis]
7 Hb_001053_110 0.1250723241 - - PREDICTED: uncharacterized protein LOC105628699 [Jatropha curcas]
8 Hb_000300_170 0.1313268821 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
9 Hb_000993_020 0.1318799098 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
10 Hb_002437_010 0.1333815798 - - PREDICTED: uncharacterized protein LOC105123193 [Populus euphratica]
11 Hb_001623_400 0.1349992808 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007313_010 0.1354626667 - - hypothetical protein JCGZ_23398 [Jatropha curcas]
13 Hb_129637_010 0.1403489544 - - PREDICTED: alpha-mannosidase isoform X1 [Populus euphratica]
14 Hb_000544_130 0.1421585541 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
15 Hb_006834_010 0.1423150107 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003768_110 0.1443447444 - - hypothetical protein POPTR_0004s12230g [Populus trichocarpa]
17 Hb_000161_230 0.146913245 - - lactoylglutathione lyase, putative [Ricinus communis]
18 Hb_005144_080 0.1487070668 - - Serine carboxypeptidase, putative [Ricinus communis]
19 Hb_000417_350 0.1506392241 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004984_020 0.15304227 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]

Gene co-expression network

sample Hb_000979_080 Hb_000979_080 Hb_000187_110 Hb_000187_110 Hb_000979_080--Hb_000187_110 Hb_001002_090 Hb_001002_090 Hb_000979_080--Hb_001002_090 Hb_003768_100 Hb_003768_100 Hb_000979_080--Hb_003768_100 Hb_003226_050 Hb_003226_050 Hb_000979_080--Hb_003226_050 Hb_055440_010 Hb_055440_010 Hb_000979_080--Hb_055440_010 Hb_001053_110 Hb_001053_110 Hb_000979_080--Hb_001053_110 Hb_000161_230 Hb_000161_230 Hb_000187_110--Hb_000161_230 Hb_000187_110--Hb_001002_090 Hb_000187_110--Hb_003226_050 Hb_000187_110--Hb_055440_010 Hb_001633_120 Hb_001633_120 Hb_000187_110--Hb_001633_120 Hb_001002_090--Hb_055440_010 Hb_072997_010 Hb_072997_010 Hb_001002_090--Hb_072997_010 Hb_009767_030 Hb_009767_030 Hb_001002_090--Hb_009767_030 Hb_001776_070 Hb_001776_070 Hb_001002_090--Hb_001776_070 Hb_008418_010 Hb_008418_010 Hb_003768_100--Hb_008418_010 Hb_000723_240 Hb_000723_240 Hb_003768_100--Hb_000723_240 Hb_003160_050 Hb_003160_050 Hb_003768_100--Hb_003160_050 Hb_007313_010 Hb_007313_010 Hb_003768_100--Hb_007313_010 Hb_003768_100--Hb_003226_050 Hb_007017_120 Hb_007017_120 Hb_003768_100--Hb_007017_120 Hb_000364_130 Hb_000364_130 Hb_003226_050--Hb_000364_130 Hb_000544_130 Hb_000544_130 Hb_003226_050--Hb_000544_130 Hb_003226_050--Hb_000161_230 Hb_055440_010--Hb_072997_010 Hb_004984_020 Hb_004984_020 Hb_055440_010--Hb_004984_020 Hb_006834_010 Hb_006834_010 Hb_055440_010--Hb_006834_010 Hb_004096_010 Hb_004096_010 Hb_055440_010--Hb_004096_010 Hb_129637_010 Hb_129637_010 Hb_001053_110--Hb_129637_010 Hb_000300_170 Hb_000300_170 Hb_001053_110--Hb_000300_170 Hb_005489_120 Hb_005489_120 Hb_001053_110--Hb_005489_120 Hb_000417_350 Hb_000417_350 Hb_001053_110--Hb_000417_350 Hb_005333_120 Hb_005333_120 Hb_001053_110--Hb_005333_120 Hb_001369_620 Hb_001369_620 Hb_001053_110--Hb_001369_620
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.120846 6.87858 17.8842 27.872 0.31069 0.0358317
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 45.622 2.004

CAGE analysis