Hb_000979_120

Information

Type -
Description -
Location Contig979: 145454-147593
Sequence    

Annotation

kegg
ID rcu:RCOM_0628790
description Pectinesterase-1 precursor, putative (EC:3.1.1.11)
nr
ID XP_002527782.1
description Pectinesterase-1 precursor, putative [Ricinus communis]
swissprot
ID O49298
description Probable pectinesterase/pectinesterase inhibitor 6 OS=Arabidopsis thaliana GN=PME6 PE=2 SV=1
trembl
ID B9SP63
description Pectinesterase OS=Ricinus communis GN=RCOM_0628790 PE=3 SV=1
Gene Ontology
ID GO:0005618
description pectin methylesterase 6 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64297: 145945-146079 , PASA_asmbl_64298: 147202-147629
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000979_120 0.0 - - Pectinesterase-1 precursor, putative [Ricinus communis]
2 Hb_000987_030 0.0452380603 transcription factor TF Family: BES1 hypothetical protein POPTR_0016s13350g [Populus trichocarpa]
3 Hb_000251_150 0.0461057374 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
4 Hb_005743_050 0.0558907401 - - unnamed protein product [Coffea canephora]
5 Hb_001049_130 0.0580333336 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
6 Hb_029879_020 0.0591328457 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
7 Hb_031862_220 0.0598768666 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
8 Hb_004452_070 0.0601210582 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
9 Hb_007317_030 0.0609744463 - - -
10 Hb_158001_010 0.061568865 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
11 Hb_001053_070 0.0618840228 desease resistance Gene Name: NB-ARC hypothetical protein EUGRSUZ_B02976 [Eucalyptus grandis]
12 Hb_000046_400 0.0619466294 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004899_190 0.0641206657 - - RecName: Full=Peroxiredoxin Q, chloroplastic; AltName: Full=Thioredoxin reductase; Flags: Precursor [Populus x jackii]
14 Hb_001936_100 0.0696645403 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000179_010 0.0704423681 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
16 Hb_000703_340 0.0705441614 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
17 Hb_003186_030 0.0706210332 transcription factor TF Family: MYB hypothetical protein POPTR_0012s05720g [Populus trichocarpa]
18 Hb_000139_170 0.0725465151 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
19 Hb_006132_080 0.0747327822 - - PREDICTED: cytochrome P450 86A8-like [Jatropha curcas]
20 Hb_000373_210 0.0751030521 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000979_120 Hb_000979_120 Hb_000987_030 Hb_000987_030 Hb_000979_120--Hb_000987_030 Hb_000251_150 Hb_000251_150 Hb_000979_120--Hb_000251_150 Hb_005743_050 Hb_005743_050 Hb_000979_120--Hb_005743_050 Hb_001049_130 Hb_001049_130 Hb_000979_120--Hb_001049_130 Hb_029879_020 Hb_029879_020 Hb_000979_120--Hb_029879_020 Hb_031862_220 Hb_031862_220 Hb_000979_120--Hb_031862_220 Hb_000987_030--Hb_005743_050 Hb_000987_030--Hb_000251_150 Hb_158001_010 Hb_158001_010 Hb_000987_030--Hb_158001_010 Hb_000987_030--Hb_001049_130 Hb_000987_030--Hb_031862_220 Hb_000046_400 Hb_000046_400 Hb_000251_150--Hb_000046_400 Hb_000251_150--Hb_005743_050 Hb_000251_150--Hb_029879_020 Hb_000179_010 Hb_000179_010 Hb_000251_150--Hb_000179_010 Hb_004452_070 Hb_004452_070 Hb_000251_150--Hb_004452_070 Hb_000139_170 Hb_000139_170 Hb_005743_050--Hb_000139_170 Hb_001775_020 Hb_001775_020 Hb_005743_050--Hb_001775_020 Hb_001295_070 Hb_001295_070 Hb_005743_050--Hb_001295_070 Hb_005743_050--Hb_158001_010 Hb_001053_070 Hb_001053_070 Hb_001049_130--Hb_001053_070 Hb_001049_130--Hb_031862_220 Hb_000373_210 Hb_000373_210 Hb_001049_130--Hb_000373_210 Hb_001936_100 Hb_001936_100 Hb_001049_130--Hb_001936_100 Hb_002400_200 Hb_002400_200 Hb_001049_130--Hb_002400_200 Hb_007317_030 Hb_007317_030 Hb_029879_020--Hb_007317_030 Hb_029879_020--Hb_000046_400 Hb_029879_020--Hb_000987_030 Hb_154064_010 Hb_154064_010 Hb_029879_020--Hb_154064_010 Hb_065774_010 Hb_065774_010 Hb_029879_020--Hb_065774_010 Hb_031862_220--Hb_001053_070 Hb_031862_220--Hb_000373_210 Hb_031862_220--Hb_001936_100 Hb_031862_220--Hb_000251_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0217815 0 4.2591 3.02682 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0389723 0 0.00775894 10.0634

CAGE analysis