Hb_000979_140

Information

Type -
Description -
Location Contig979: 159146-164216
Sequence    

Annotation

kegg
ID pop:POPTR_0010s11990g
description POPTRDRAFT_231820; kinase family protein
nr
ID XP_002315871.2
description kinase family protein [Populus trichocarpa]
swissprot
ID Q8GYA4
description Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10 PE=1 SV=3
trembl
ID B9HW43
description Kinase family protein OS=Populus trichocarpa GN=POPTR_0010s11990g PE=4 SV=2
Gene Ontology
ID GO:0005622
description receptor-like protein kinase at4g00960

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64303: 162943-163049 , PASA_asmbl_64304: 159209-164108
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000979_140 0.0 - - kinase family protein [Populus trichocarpa]
2 Hb_001729_020 0.0705915186 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
3 Hb_000452_030 0.079144925 - - Protein phosphatase 1 regulatory subunit, putative [Ricinus communis]
4 Hb_004052_110 0.0805391629 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
5 Hb_000015_090 0.087094502 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
6 Hb_000197_180 0.0893062199 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
7 Hb_007416_260 0.0910311268 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
8 Hb_003725_010 0.0928441645 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
9 Hb_012762_040 0.0928915058 - - big map kinase/bmk, putative [Ricinus communis]
10 Hb_000375_060 0.093624325 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
11 Hb_000137_010 0.0939390894 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
12 Hb_002259_220 0.0962420031 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
13 Hb_001865_100 0.096633119 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
14 Hb_000815_310 0.0967495645 - - protein kinase, putative [Ricinus communis]
15 Hb_000680_120 0.0984475116 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
16 Hb_000711_010 0.0987390938 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
17 Hb_000098_180 0.1010498867 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
18 Hb_001766_070 0.1010625146 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003687_130 0.1013896738 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
20 Hb_002965_050 0.1026369354 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]

Gene co-expression network

sample Hb_000979_140 Hb_000979_140 Hb_001729_020 Hb_001729_020 Hb_000979_140--Hb_001729_020 Hb_000452_030 Hb_000452_030 Hb_000979_140--Hb_000452_030 Hb_004052_110 Hb_004052_110 Hb_000979_140--Hb_004052_110 Hb_000015_090 Hb_000015_090 Hb_000979_140--Hb_000015_090 Hb_000197_180 Hb_000197_180 Hb_000979_140--Hb_000197_180 Hb_007416_260 Hb_007416_260 Hb_000979_140--Hb_007416_260 Hb_002686_150 Hb_002686_150 Hb_001729_020--Hb_002686_150 Hb_000711_010 Hb_000711_010 Hb_001729_020--Hb_000711_010 Hb_002349_030 Hb_002349_030 Hb_001729_020--Hb_002349_030 Hb_003428_090 Hb_003428_090 Hb_001729_020--Hb_003428_090 Hb_002965_050 Hb_002965_050 Hb_001729_020--Hb_002965_050 Hb_000452_030--Hb_000015_090 Hb_003687_130 Hb_003687_130 Hb_000452_030--Hb_003687_130 Hb_002259_170 Hb_002259_170 Hb_000452_030--Hb_002259_170 Hb_000015_200 Hb_000015_200 Hb_000452_030--Hb_000015_200 Hb_111552_010 Hb_111552_010 Hb_000452_030--Hb_111552_010 Hb_002259_220 Hb_002259_220 Hb_004052_110--Hb_002259_220 Hb_001059_060 Hb_001059_060 Hb_004052_110--Hb_001059_060 Hb_001998_210 Hb_001998_210 Hb_004052_110--Hb_001998_210 Hb_001865_100 Hb_001865_100 Hb_004052_110--Hb_001865_100 Hb_011188_010 Hb_011188_010 Hb_004052_110--Hb_011188_010 Hb_000664_090 Hb_000664_090 Hb_000015_090--Hb_000664_090 Hb_004375_110 Hb_004375_110 Hb_000015_090--Hb_004375_110 Hb_003725_010 Hb_003725_010 Hb_000015_090--Hb_003725_010 Hb_000015_090--Hb_000015_200 Hb_000853_330 Hb_000853_330 Hb_000197_180--Hb_000853_330 Hb_002739_120 Hb_002739_120 Hb_000197_180--Hb_002739_120 Hb_000197_180--Hb_004375_110 Hb_060094_010 Hb_060094_010 Hb_000197_180--Hb_060094_010 Hb_000197_180--Hb_002349_030 Hb_000815_310 Hb_000815_310 Hb_007416_260--Hb_000815_310 Hb_007416_260--Hb_002965_050 Hb_000261_280 Hb_000261_280 Hb_007416_260--Hb_000261_280 Hb_000137_010 Hb_000137_010 Hb_007416_260--Hb_000137_010 Hb_002876_210 Hb_002876_210 Hb_007416_260--Hb_002876_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.00488 10.0657 12.8456 8.97937 1.53355 2.12007
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.47851 3.32147 2.58769 5.14993 9.68353

CAGE analysis