Hb_000979_200

Information

Type -
Description -
Location Contig979: 211964-213568
Sequence    

Annotation

kegg
ID rcu:RCOM_0629250
description hypothetical protein
nr
ID XP_012072260.1
description PREDICTED: uncharacterized protein LOC105634088 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SP69
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0629250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64314: 212011-213579 , PASA_asmbl_64315: 212011-213500
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000979_200 0.0 - - PREDICTED: uncharacterized protein LOC105634088 [Jatropha curcas]
2 Hb_003581_100 0.0947350468 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
3 Hb_004586_170 0.0979157866 - - hypothetical protein PRUPE_ppa011196mg [Prunus persica]
4 Hb_028486_030 0.1053475598 - - hypothetical protein JCGZ_12706 [Jatropha curcas]
5 Hb_001246_060 0.1063020906 - - ATP binding protein, putative [Ricinus communis]
6 Hb_026549_040 0.1095109365 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
7 Hb_012675_050 0.1106248842 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001083_020 0.1164123198 - - -
9 Hb_000479_090 0.1166775371 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
10 Hb_000210_220 0.1167919564 - - hypothetical protein POPTR_0006s22010g [Populus trichocarpa]
11 Hb_004127_020 0.1170758289 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
12 Hb_003683_120 0.1189763411 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000574_160 0.1200311046 - - PREDICTED: arogenate dehydrogenase 2, chloroplastic [Jatropha curcas]
14 Hb_000265_050 0.1207004088 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
15 Hb_000230_510 0.1225067367 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
16 Hb_138585_050 0.1232163064 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
17 Hb_000680_140 0.1233362584 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
18 Hb_024714_010 0.1237439605 - - HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
19 Hb_004871_040 0.1252652272 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase [Jatropha curcas]
20 Hb_001513_010 0.1261739462 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000979_200 Hb_000979_200 Hb_003581_100 Hb_003581_100 Hb_000979_200--Hb_003581_100 Hb_004586_170 Hb_004586_170 Hb_000979_200--Hb_004586_170 Hb_028486_030 Hb_028486_030 Hb_000979_200--Hb_028486_030 Hb_001246_060 Hb_001246_060 Hb_000979_200--Hb_001246_060 Hb_026549_040 Hb_026549_040 Hb_000979_200--Hb_026549_040 Hb_012675_050 Hb_012675_050 Hb_000979_200--Hb_012675_050 Hb_000680_140 Hb_000680_140 Hb_003581_100--Hb_000680_140 Hb_001421_060 Hb_001421_060 Hb_003581_100--Hb_001421_060 Hb_005736_060 Hb_005736_060 Hb_003581_100--Hb_005736_060 Hb_024714_010 Hb_024714_010 Hb_003581_100--Hb_024714_010 Hb_009711_020 Hb_009711_020 Hb_003581_100--Hb_009711_020 Hb_011781_030 Hb_011781_030 Hb_003581_100--Hb_011781_030 Hb_000788_090 Hb_000788_090 Hb_004586_170--Hb_000788_090 Hb_001047_230 Hb_001047_230 Hb_004586_170--Hb_001047_230 Hb_004306_100 Hb_004306_100 Hb_004586_170--Hb_004306_100 Hb_000732_130 Hb_000732_130 Hb_004586_170--Hb_000732_130 Hb_004586_170--Hb_028486_030 Hb_028486_030--Hb_000680_140 Hb_000962_040 Hb_000962_040 Hb_028486_030--Hb_000962_040 Hb_004846_090 Hb_004846_090 Hb_028486_030--Hb_004846_090 Hb_007220_010 Hb_007220_010 Hb_028486_030--Hb_007220_010 Hb_028486_030--Hb_026549_040 Hb_028486_030--Hb_012675_050 Hb_001951_140 Hb_001951_140 Hb_001246_060--Hb_001951_140 Hb_001117_090 Hb_001117_090 Hb_001246_060--Hb_001117_090 Hb_002686_020 Hb_002686_020 Hb_001246_060--Hb_002686_020 Hb_002205_070 Hb_002205_070 Hb_001246_060--Hb_002205_070 Hb_001540_010 Hb_001540_010 Hb_001246_060--Hb_001540_010 Hb_001246_060--Hb_026549_040 Hb_002942_190 Hb_002942_190 Hb_026549_040--Hb_002942_190 Hb_001292_020 Hb_001292_020 Hb_026549_040--Hb_001292_020 Hb_000479_090 Hb_000479_090 Hb_026549_040--Hb_000479_090 Hb_026549_040--Hb_002686_020 Hb_000384_100 Hb_000384_100 Hb_026549_040--Hb_000384_100 Hb_026549_040--Hb_012675_050 Hb_011909_100 Hb_011909_100 Hb_012675_050--Hb_011909_100 Hb_000107_160 Hb_000107_160 Hb_012675_050--Hb_000107_160 Hb_000061_210 Hb_000061_210 Hb_012675_050--Hb_000061_210 Hb_000046_050 Hb_000046_050 Hb_012675_050--Hb_000046_050 Hb_103118_010 Hb_103118_010 Hb_012675_050--Hb_103118_010 Hb_002408_020 Hb_002408_020 Hb_012675_050--Hb_002408_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.51979 3.24845 1.91257 2.69934 5.12444 6.18031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.13308 15.6034 6.83068 2.16655 7.83673

CAGE analysis