Hb_000979_230

Information

Type -
Description -
Location Contig979: 225041-228419
Sequence    

Annotation

kegg
ID rcu:RCOM_0629400
description expressed protein, putative
nr
ID XP_012067156.1
description PREDICTED: protein BCCIP homolog [Jatropha curcas]
swissprot
ID O64885
description Protein BCCIP homolog OS=Arabidopsis thaliana GN=At2g44510 PE=1 SV=2
trembl
ID A0A067L0R4
description Protein BCCIP homolog OS=Jatropha curcas GN=JCGZ_04723 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64318: 225081-225390 , PASA_asmbl_64319: 226776-227135 , PASA_asmbl_64320: 227453-228392
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000979_230 0.0 - - PREDICTED: protein BCCIP homolog [Jatropha curcas]
2 Hb_000239_010 0.0613265061 - - WD-repeat protein, putative [Ricinus communis]
3 Hb_000671_090 0.0702462203 - - PREDICTED: melanoma-associated antigen 1 [Jatropha curcas]
4 Hb_000270_370 0.0703418588 - - Uncharacterized protein TCM_011954 [Theobroma cacao]
5 Hb_001691_210 0.0729228915 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
6 Hb_001109_020 0.0737142796 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009666_040 0.0740160556 - - glutathione transferase, putative [Ricinus communis]
8 Hb_027073_040 0.0771558834 - - TGF-beta-inducible nuclear protein, putative [Ricinus communis]
9 Hb_002759_060 0.0789283162 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
10 Hb_000205_270 0.0791526534 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
11 Hb_001829_060 0.0793757705 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
12 Hb_003226_280 0.0832025264 - - PREDICTED: peter Pan-like protein [Populus euphratica]
13 Hb_008300_010 0.0837194782 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
14 Hb_001140_060 0.0838491608 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
15 Hb_012753_160 0.0844739362 - - ara4-interacting protein, putative [Ricinus communis]
16 Hb_004837_140 0.0845292265 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
17 Hb_000046_110 0.0845439462 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
18 Hb_029866_040 0.0850503035 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
19 Hb_003996_020 0.0853851525 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000444_050 0.085797026 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000979_230 Hb_000979_230 Hb_000239_010 Hb_000239_010 Hb_000979_230--Hb_000239_010 Hb_000671_090 Hb_000671_090 Hb_000979_230--Hb_000671_090 Hb_000270_370 Hb_000270_370 Hb_000979_230--Hb_000270_370 Hb_001691_210 Hb_001691_210 Hb_000979_230--Hb_001691_210 Hb_001109_020 Hb_001109_020 Hb_000979_230--Hb_001109_020 Hb_009666_040 Hb_009666_040 Hb_000979_230--Hb_009666_040 Hb_000239_010--Hb_009666_040 Hb_003226_280 Hb_003226_280 Hb_000239_010--Hb_003226_280 Hb_116898_010 Hb_116898_010 Hb_000239_010--Hb_116898_010 Hb_001141_280 Hb_001141_280 Hb_000239_010--Hb_001141_280 Hb_000205_270 Hb_000205_270 Hb_000239_010--Hb_000205_270 Hb_000009_160 Hb_000009_160 Hb_000671_090--Hb_000009_160 Hb_007479_020 Hb_007479_020 Hb_000671_090--Hb_007479_020 Hb_158467_010 Hb_158467_010 Hb_000671_090--Hb_158467_010 Hb_000671_090--Hb_000270_370 Hb_000834_270 Hb_000834_270 Hb_000671_090--Hb_000834_270 Hb_027073_040 Hb_027073_040 Hb_000270_370--Hb_027073_040 Hb_000221_160 Hb_000221_160 Hb_000270_370--Hb_000221_160 Hb_000373_120 Hb_000373_120 Hb_000270_370--Hb_000373_120 Hb_033834_040 Hb_033834_040 Hb_000270_370--Hb_033834_040 Hb_000089_160 Hb_000089_160 Hb_001691_210--Hb_000089_160 Hb_001718_100 Hb_001718_100 Hb_001691_210--Hb_001718_100 Hb_005997_010 Hb_005997_010 Hb_001691_210--Hb_005997_010 Hb_003175_040 Hb_003175_040 Hb_001691_210--Hb_003175_040 Hb_003020_230 Hb_003020_230 Hb_001691_210--Hb_003020_230 Hb_001691_210--Hb_000205_270 Hb_001829_060 Hb_001829_060 Hb_001109_020--Hb_001829_060 Hb_000046_110 Hb_000046_110 Hb_001109_020--Hb_000046_110 Hb_003927_130 Hb_003927_130 Hb_001109_020--Hb_003927_130 Hb_001109_020--Hb_000205_270 Hb_000883_050 Hb_000883_050 Hb_001109_020--Hb_000883_050 Hb_000086_070 Hb_000086_070 Hb_001109_020--Hb_000086_070 Hb_009666_040--Hb_001829_060 Hb_009666_040--Hb_001141_280 Hb_009666_040--Hb_000205_270 Hb_000329_310 Hb_000329_310 Hb_009666_040--Hb_000329_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.56719 1.45689 2.0367 4.54804 5.19917 7.83879
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.08582 13.4024 11.3524 5.68861 2.34656

CAGE analysis