Hb_000979_240

Information

Type transcription factor
Description TF Family: GRAS
Location Contig979: 242310-244220
Sequence    

Annotation

kegg
ID rcu:RCOM_0629510
description DELLA protein GAIP-B, putative
nr
ID XP_012072251.1
description PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
swissprot
ID Q8S4W7
description DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1
trembl
ID A0A067L1V6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04722 PE=4 SV=1
Gene Ontology
ID GO:0005634
description della protein gaip-b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64321: 242187-244551
cDNA
(Sanger)
(ID:Location)		 051_D16.ab1: 242237-242640

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000979_240 0.0 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
2 Hb_000175_350 0.0854401606 - - phopholipase d alpha, putative [Ricinus communis]
3 Hb_001488_270 0.09709678 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
4 Hb_000197_290 0.107984195 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
5 Hb_000751_140 0.1104007689 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]
6 Hb_000599_130 0.119629472 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
7 Hb_000574_510 0.1199023557 - - protein kinase, putative [Ricinus communis]
8 Hb_004162_120 0.120119729 - - PREDICTED: vacuolar protein sorting-associated protein 41 homolog [Populus euphratica]
9 Hb_104265_030 0.1227856394 - - hypothetical protein POPTR_0001s31230g [Populus trichocarpa]
10 Hb_002375_110 0.1240602204 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
11 Hb_000608_260 0.1247203713 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
12 Hb_007813_030 0.1252698697 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At4g19050 [Jatropha curcas]
13 Hb_002173_020 0.1255900271 - - PREDICTED: uncharacterized protein LOC105801078 [Gossypium raimondii]
14 Hb_000422_110 0.1266553819 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]
15 Hb_003120_070 0.1297996649 - - ATP binding protein, putative [Ricinus communis]
16 Hb_080451_010 0.1301198202 - - PREDICTED: ankyrin repeat-containing protein At2g01680 [Jatropha curcas]
17 Hb_012239_030 0.1304956923 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_000120_520 0.1307917105 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
19 Hb_001205_110 0.1320240918 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
20 Hb_003604_040 0.1329875581 - - Serine/threonine-protein kinase sepA [Morus notabilis]

Gene co-expression network

sample Hb_000979_240 Hb_000979_240 Hb_000175_350 Hb_000175_350 Hb_000979_240--Hb_000175_350 Hb_001488_270 Hb_001488_270 Hb_000979_240--Hb_001488_270 Hb_000197_290 Hb_000197_290 Hb_000979_240--Hb_000197_290 Hb_000751_140 Hb_000751_140 Hb_000979_240--Hb_000751_140 Hb_000599_130 Hb_000599_130 Hb_000979_240--Hb_000599_130 Hb_000574_510 Hb_000574_510 Hb_000979_240--Hb_000574_510 Hb_000175_350--Hb_000599_130 Hb_178127_010 Hb_178127_010 Hb_000175_350--Hb_178127_010 Hb_000120_420 Hb_000120_420 Hb_000175_350--Hb_000120_420 Hb_005333_030 Hb_005333_030 Hb_000175_350--Hb_005333_030 Hb_000120_520 Hb_000120_520 Hb_000175_350--Hb_000120_520 Hb_000176_130 Hb_000176_130 Hb_001488_270--Hb_000176_130 Hb_001488_270--Hb_000197_290 Hb_000265_090 Hb_000265_090 Hb_001488_270--Hb_000265_090 Hb_000358_200 Hb_000358_200 Hb_001488_270--Hb_000358_200 Hb_007813_030 Hb_007813_030 Hb_001488_270--Hb_007813_030 Hb_002027_280 Hb_002027_280 Hb_001488_270--Hb_002027_280 Hb_000197_290--Hb_007813_030 Hb_000197_290--Hb_000574_510 Hb_000062_470 Hb_000062_470 Hb_000197_290--Hb_000062_470 Hb_003604_040 Hb_003604_040 Hb_000197_290--Hb_003604_040 Hb_003120_070 Hb_003120_070 Hb_000197_290--Hb_003120_070 Hb_044653_020 Hb_044653_020 Hb_000751_140--Hb_044653_020 Hb_003895_020 Hb_003895_020 Hb_000751_140--Hb_003895_020 Hb_000751_140--Hb_003120_070 Hb_000334_130 Hb_000334_130 Hb_000751_140--Hb_000334_130 Hb_000117_070 Hb_000117_070 Hb_000751_140--Hb_000117_070 Hb_000635_200 Hb_000635_200 Hb_000751_140--Hb_000635_200 Hb_001369_770 Hb_001369_770 Hb_000599_130--Hb_001369_770 Hb_018301_010 Hb_018301_010 Hb_000599_130--Hb_018301_010 Hb_002942_110 Hb_002942_110 Hb_000599_130--Hb_002942_110 Hb_004310_040 Hb_004310_040 Hb_000599_130--Hb_004310_040 Hb_000599_130--Hb_000120_420 Hb_000544_060 Hb_000544_060 Hb_000574_510--Hb_000544_060 Hb_000574_510--Hb_007813_030 Hb_000574_510--Hb_003604_040 Hb_000661_200 Hb_000661_200 Hb_000574_510--Hb_000661_200 Hb_011671_230 Hb_011671_230 Hb_000574_510--Hb_011671_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.0725 65.7705 14.444 34.3199 29.8489 31.2211
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.93216 4.40829 7.99521 16.6166 19.5137

CAGE analysis