Hb_000979_250

Information

Type -
Description -
Location Contig979: 251709-253447
Sequence    

Annotation

kegg
ID rcu:RCOM_0629740
description hypothetical protein
nr
ID XP_002527797.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q56XJ7
description Uncharacterized protein At4g22758 OS=Arabidopsis thaliana GN=At4g22758 PE=2 SV=1
trembl
ID B9SP78
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0629740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64322: 251774-253206
cDNA
(Sanger)
(ID:Location)		 033_O21.ab1: 251789-252081

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000979_250 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008066_030 0.1272737944 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
3 Hb_001511_140 0.1311650895 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
4 Hb_000613_160 0.1517201876 - - coated vesicle membrane protein, putative [Ricinus communis]
5 Hb_001776_170 0.1524689723 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003198_010 0.1624316959 - - Valine--tRNA ligase [Gossypium arboreum]
7 Hb_001488_370 0.1646401843 - - Esterase PIR7B, putative [Ricinus communis]
8 Hb_001369_600 0.167814054 - - kinase, putative [Ricinus communis]
9 Hb_001369_450 0.169023749 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
10 Hb_003181_050 0.1700267648 - - PREDICTED: DNA replication complex GINS protein PSF2 [Jatropha curcas]
11 Hb_012053_040 0.1746683135 - - PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Jatropha curcas]
12 Hb_002067_140 0.1752982002 - - -
13 Hb_002704_050 0.1781179013 - - cysteine-type peptidase, putative [Ricinus communis]
14 Hb_012053_050 0.1796029588 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
15 Hb_004567_020 0.1799697623 - - Small ubiquitin-related modifier 2 [Morus notabilis]
16 Hb_000270_620 0.1818234114 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
17 Hb_089100_020 0.1820582368 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
18 Hb_000167_030 0.1849050761 - - PREDICTED: uncharacterized protein LOC105641111 isoform X1 [Jatropha curcas]
19 Hb_089100_030 0.1859663206 - - -
20 Hb_007254_080 0.1860284486 - - -

Gene co-expression network

sample Hb_000979_250 Hb_000979_250 Hb_008066_030 Hb_008066_030 Hb_000979_250--Hb_008066_030 Hb_001511_140 Hb_001511_140 Hb_000979_250--Hb_001511_140 Hb_000613_160 Hb_000613_160 Hb_000979_250--Hb_000613_160 Hb_001776_170 Hb_001776_170 Hb_000979_250--Hb_001776_170 Hb_003198_010 Hb_003198_010 Hb_000979_250--Hb_003198_010 Hb_001488_370 Hb_001488_370 Hb_000979_250--Hb_001488_370 Hb_008066_030--Hb_003198_010 Hb_004567_020 Hb_004567_020 Hb_008066_030--Hb_004567_020 Hb_001433_100 Hb_001433_100 Hb_008066_030--Hb_001433_100 Hb_000792_120 Hb_000792_120 Hb_008066_030--Hb_000792_120 Hb_000300_210 Hb_000300_210 Hb_008066_030--Hb_000300_210 Hb_000788_080 Hb_000788_080 Hb_001511_140--Hb_000788_080 Hb_001511_140--Hb_001776_170 Hb_012053_040 Hb_012053_040 Hb_001511_140--Hb_012053_040 Hb_002759_240 Hb_002759_240 Hb_001511_140--Hb_002759_240 Hb_000592_060 Hb_000592_060 Hb_001511_140--Hb_000592_060 Hb_000613_160--Hb_000788_080 Hb_005000_160 Hb_005000_160 Hb_000613_160--Hb_005000_160 Hb_001507_070 Hb_001507_070 Hb_000613_160--Hb_001507_070 Hb_002704_050 Hb_002704_050 Hb_000613_160--Hb_002704_050 Hb_001276_060 Hb_001276_060 Hb_000613_160--Hb_001276_060 Hb_002067_140 Hb_002067_140 Hb_001776_170--Hb_002067_140 Hb_001369_600 Hb_001369_600 Hb_001776_170--Hb_001369_600 Hb_012053_050 Hb_012053_050 Hb_001776_170--Hb_012053_050 Hb_001776_170--Hb_002759_240 Hb_000696_220 Hb_000696_220 Hb_003198_010--Hb_000696_220 Hb_000853_240 Hb_000853_240 Hb_003198_010--Hb_000853_240 Hb_089100_020 Hb_089100_020 Hb_003198_010--Hb_089100_020 Hb_001386_050 Hb_001386_050 Hb_003198_010--Hb_001386_050 Hb_003181_050 Hb_003181_050 Hb_003198_010--Hb_003181_050 Hb_000032_350 Hb_000032_350 Hb_003198_010--Hb_000032_350 Hb_012545_050 Hb_012545_050 Hb_001488_370--Hb_012545_050 Hb_001488_370--Hb_012053_050 Hb_001488_370--Hb_001369_600 Hb_000997_190 Hb_000997_190 Hb_001488_370--Hb_000997_190 Hb_001437_130 Hb_001437_130 Hb_001488_370--Hb_001437_130 Hb_001488_370--Hb_001776_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.1481 30.5343 25.5101 26.4137 5.06587 6.21397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
159.175 347.094 195.428 13.3564 3.37435

CAGE analysis