Hb_000980_070

Information

Type -
Description -
Location Contig980: 93810-97315
Sequence    

Annotation

kegg
ID mdm:103440883
description uncharacterized LOC103440883
nr
ID XP_008377803.1
description PREDICTED: uncharacterized protein LOC103440883 [Malus domestica]
swissprot
ID -
description -
trembl
ID A5B9K1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036524 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000980_070 0.0 - - PREDICTED: uncharacterized protein LOC103440883 [Malus domestica]
2 Hb_012760_020 0.2498577231 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
3 Hb_008494_050 0.2671873107 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
4 Hb_000000_100 0.2701560893 - - hypothetical protein POPTR_0002s13260g [Populus trichocarpa]
5 Hb_000108_170 0.2711961643 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
6 Hb_000554_030 0.2819153966 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X1 [Jatropha curcas]
7 Hb_000304_060 0.3153444836 transcription factor TF Family: GRAS hypothetical protein POPTR_0010s15360g [Populus trichocarpa]
8 Hb_000191_010 0.3249741247 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_074108_010 0.3250662455 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
10 Hb_011437_030 0.3282813162 - - PREDICTED: uncharacterized protein LOC105037131, partial [Elaeis guineensis]
11 Hb_000512_070 0.3290711113 - - PREDICTED: GDSL esterase/lipase At1g71250-like [Jatropha curcas]
12 Hb_000545_160 0.333739858 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
13 Hb_023344_070 0.3356962242 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
14 Hb_000816_270 0.3449816233 - - -
15 Hb_003760_040 0.3452249618 - - organic anion transporter, putative [Ricinus communis]
16 Hb_002876_160 0.3480252287 - - sucrose transporter 1 [Hevea brasiliensis]
17 Hb_000566_030 0.3485353478 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
18 Hb_002131_040 0.3494940959 - - proton-dependent oligopeptide transport family protein [Populus trichocarpa]
19 Hb_004103_030 0.3497423626 - - conserved hypothetical protein [Ricinus communis]
20 Hb_012522_010 0.3541641569 - - hypothetical protein VITISV_003261 [Vitis vinifera]

Gene co-expression network

sample Hb_000980_070 Hb_000980_070 Hb_012760_020 Hb_012760_020 Hb_000980_070--Hb_012760_020 Hb_008494_050 Hb_008494_050 Hb_000980_070--Hb_008494_050 Hb_000000_100 Hb_000000_100 Hb_000980_070--Hb_000000_100 Hb_000108_170 Hb_000108_170 Hb_000980_070--Hb_000108_170 Hb_000554_030 Hb_000554_030 Hb_000980_070--Hb_000554_030 Hb_000304_060 Hb_000304_060 Hb_000980_070--Hb_000304_060 Hb_012522_010 Hb_012522_010 Hb_012760_020--Hb_012522_010 Hb_012760_020--Hb_000108_170 Hb_163837_010 Hb_163837_010 Hb_012760_020--Hb_163837_010 Hb_012760_020--Hb_000304_060 Hb_012760_020--Hb_000000_100 Hb_000566_030 Hb_000566_030 Hb_008494_050--Hb_000566_030 Hb_000853_400 Hb_000853_400 Hb_008494_050--Hb_000853_400 Hb_000334_180 Hb_000334_180 Hb_008494_050--Hb_000334_180 Hb_002666_020 Hb_002666_020 Hb_008494_050--Hb_002666_020 Hb_007590_070 Hb_007590_070 Hb_008494_050--Hb_007590_070 Hb_004103_030 Hb_004103_030 Hb_008494_050--Hb_004103_030 Hb_000000_100--Hb_004103_030 Hb_000000_100--Hb_000304_060 Hb_001976_080 Hb_001976_080 Hb_000000_100--Hb_001976_080 Hb_000000_100--Hb_008494_050 Hb_008511_010 Hb_008511_010 Hb_000000_100--Hb_008511_010 Hb_000251_090 Hb_000251_090 Hb_000000_100--Hb_000251_090 Hb_007676_020 Hb_007676_020 Hb_000108_170--Hb_007676_020 Hb_011512_130 Hb_011512_130 Hb_000108_170--Hb_011512_130 Hb_005841_080 Hb_005841_080 Hb_000108_170--Hb_005841_080 Hb_008066_070 Hb_008066_070 Hb_000108_170--Hb_008066_070 Hb_000733_210 Hb_000733_210 Hb_000108_170--Hb_000733_210 Hb_005539_260 Hb_005539_260 Hb_000554_030--Hb_005539_260 Hb_000398_050 Hb_000398_050 Hb_000554_030--Hb_000398_050 Hb_007975_050 Hb_007975_050 Hb_000554_030--Hb_007975_050 Hb_000856_050 Hb_000856_050 Hb_000554_030--Hb_000856_050 Hb_002660_060 Hb_002660_060 Hb_000554_030--Hb_002660_060 Hb_002527_050 Hb_002527_050 Hb_000554_030--Hb_002527_050 Hb_000304_060--Hb_163837_010 Hb_000304_060--Hb_012522_010 Hb_000512_070 Hb_000512_070 Hb_000304_060--Hb_000512_070 Hb_000304_060--Hb_000251_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0264864 0.0069602 0.0193785 0.00833928 0.00847646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0605356 0.0379713 0

CAGE analysis