Hb_000982_060

Information

Type -
Description -
Location Contig982: 120331-124431
Sequence    

Annotation

kegg
ID rcu:RCOM_1612000
description zinc finger protein, putative
nr
ID XP_012083578.1
description PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
swissprot
ID Q8VYP5
description Probable protein S-acyltransferase 14 OS=Arabidopsis thaliana GN=PAT14 PE=2 SV=1
trembl
ID A0A067JY22
description S-acyltransferase OS=Jatropha curcas GN=JCGZ_14528 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable protein s-acyltransferase 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64414: 120356-124490 , PASA_asmbl_64415: 120481-124418
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000982_060 0.0 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
2 Hb_135831_010 0.073694732 - - hypothetical protein JCGZ_13374 [Jatropha curcas]
3 Hb_000000_270 0.0790442509 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
4 Hb_000442_150 0.0794297647 - - PREDICTED: uncharacterized protein LOC105649224 [Jatropha curcas]
5 Hb_003893_030 0.0797118203 - - Protein yrdA, putative [Ricinus communis]
6 Hb_001135_130 0.0811837509 - - hypothetical protein CISIN_1g0171752mg, partial [Citrus sinensis]
7 Hb_000683_070 0.081263896 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
8 Hb_002235_210 0.0858713812 - - PREDICTED: vesicle transport v-SNARE 13-like [Populus euphratica]
9 Hb_000366_120 0.0862718345 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
10 Hb_021409_040 0.0872397821 - - PREDICTED: FAS-associated factor 2 [Jatropha curcas]
11 Hb_000011_190 0.0872703459 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6 [Jatropha curcas]
12 Hb_014497_050 0.0888132943 transcription factor TF Family: bZIP hypothetical protein JCGZ_08021 [Jatropha curcas]
13 Hb_010485_020 0.090366831 - - PREDICTED: thaumatin-like protein 1b isoform X1 [Jatropha curcas]
14 Hb_028962_020 0.0905824864 - - hypothetical protein POPTR_0016s00660g [Populus trichocarpa]
15 Hb_003549_150 0.0921450338 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
16 Hb_000120_170 0.0924605732 - - selenoprotein [Populus trichocarpa]
17 Hb_004310_020 0.0924939639 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
18 Hb_000309_040 0.0944927274 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
19 Hb_001051_080 0.0945032557 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
20 Hb_000009_400 0.0957115692 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]

Gene co-expression network

sample Hb_000982_060 Hb_000982_060 Hb_135831_010 Hb_135831_010 Hb_000982_060--Hb_135831_010 Hb_000000_270 Hb_000000_270 Hb_000982_060--Hb_000000_270 Hb_000442_150 Hb_000442_150 Hb_000982_060--Hb_000442_150 Hb_003893_030 Hb_003893_030 Hb_000982_060--Hb_003893_030 Hb_001135_130 Hb_001135_130 Hb_000982_060--Hb_001135_130 Hb_000683_070 Hb_000683_070 Hb_000982_060--Hb_000683_070 Hb_000120_170 Hb_000120_170 Hb_135831_010--Hb_000120_170 Hb_003549_150 Hb_003549_150 Hb_135831_010--Hb_003549_150 Hb_002876_320 Hb_002876_320 Hb_135831_010--Hb_002876_320 Hb_007416_300 Hb_007416_300 Hb_135831_010--Hb_007416_300 Hb_000009_400 Hb_000009_400 Hb_135831_010--Hb_000009_400 Hb_000366_120 Hb_000366_120 Hb_000000_270--Hb_000366_120 Hb_000562_090 Hb_000562_090 Hb_000000_270--Hb_000562_090 Hb_001541_230 Hb_001541_230 Hb_000000_270--Hb_001541_230 Hb_028962_020 Hb_028962_020 Hb_000000_270--Hb_028962_020 Hb_000886_050 Hb_000886_050 Hb_000000_270--Hb_000886_050 Hb_008246_040 Hb_008246_040 Hb_000442_150--Hb_008246_040 Hb_002671_140 Hb_002671_140 Hb_000442_150--Hb_002671_140 Hb_057878_010 Hb_057878_010 Hb_000442_150--Hb_057878_010 Hb_000442_150--Hb_001135_130 Hb_000442_150--Hb_003893_030 Hb_002235_210 Hb_002235_210 Hb_003893_030--Hb_002235_210 Hb_005271_220 Hb_005271_220 Hb_003893_030--Hb_005271_220 Hb_002311_180 Hb_002311_180 Hb_003893_030--Hb_002311_180 Hb_000521_320 Hb_000521_320 Hb_003893_030--Hb_000521_320 Hb_004310_020 Hb_004310_020 Hb_001135_130--Hb_004310_020 Hb_000205_300 Hb_000205_300 Hb_001135_130--Hb_000205_300 Hb_001135_130--Hb_002235_210 Hb_001135_130--Hb_057878_010 Hb_005503_040 Hb_005503_040 Hb_000683_070--Hb_005503_040 Hb_000617_100 Hb_000617_100 Hb_000683_070--Hb_000617_100 Hb_021409_040 Hb_021409_040 Hb_000683_070--Hb_021409_040 Hb_000683_070--Hb_000366_120 Hb_001369_130 Hb_001369_130 Hb_000683_070--Hb_001369_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.7757 20.3336 12.4726 26.0768 21.0879 16.6152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.8246 13.5368 15.1178 10.9973 7.72168

CAGE analysis