Hb_000982_080

Information

Type desease resistance
Description Gene Name: AAA
Location Contig982: 142862-147464
Sequence    

Annotation

kegg
ID pop:POPTR_0002s25390g
description POPTRDRAFT_830601; 26S protease regulatory complex subunit 4 family protein
nr
ID XP_012085169.1
description PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
swissprot
ID Q9SZD4
description 26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=1 SV=1
trembl
ID A0A067JRB4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17585 PE=3 SV=1
Gene Ontology
ID GO:0000502
description 26s proteasome regulatory subunit 4 homolog a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64416: 142869-147453 , PASA_asmbl_64417: 145089-145343
cDNA
(Sanger)
(ID:Location)		 035_C16.ab1: 142869-144897 , 045_G18.ab1: 142869-144917

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000982_080 0.0 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
2 Hb_003376_250 0.05418829 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
3 Hb_011344_190 0.0578319604 - - PREDICTED: maspardin [Jatropha curcas]
4 Hb_005488_200 0.0582210538 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
5 Hb_001195_200 0.0584751476 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
6 Hb_008232_010 0.0601347684 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
7 Hb_006420_080 0.0720243792 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_000603_080 0.075967798 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
9 Hb_001222_080 0.0784868056 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
10 Hb_000820_090 0.0803955 - - -
11 Hb_003622_040 0.0811037156 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
12 Hb_003768_030 0.0811804001 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
13 Hb_000934_190 0.0821252319 - - SER/ARG-rich protein 34A [Theobroma cacao]
14 Hb_000300_430 0.0841774249 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
15 Hb_005914_170 0.0842254187 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
16 Hb_000258_260 0.085201292 - - PREDICTED: protein HGH1 homolog [Jatropha curcas]
17 Hb_000673_020 0.0855018234 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
18 Hb_003994_260 0.0859911993 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
19 Hb_007416_060 0.0866626082 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]
20 Hb_001218_030 0.0888184511 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]

Gene co-expression network

sample Hb_000982_080 Hb_000982_080 Hb_003376_250 Hb_003376_250 Hb_000982_080--Hb_003376_250 Hb_011344_190 Hb_011344_190 Hb_000982_080--Hb_011344_190 Hb_005488_200 Hb_005488_200 Hb_000982_080--Hb_005488_200 Hb_001195_200 Hb_001195_200 Hb_000982_080--Hb_001195_200 Hb_008232_010 Hb_008232_010 Hb_000982_080--Hb_008232_010 Hb_006420_080 Hb_006420_080 Hb_000982_080--Hb_006420_080 Hb_003376_250--Hb_011344_190 Hb_003376_250--Hb_005488_200 Hb_003376_250--Hb_001195_200 Hb_000327_180 Hb_000327_180 Hb_003376_250--Hb_000327_180 Hb_007416_060 Hb_007416_060 Hb_003376_250--Hb_007416_060 Hb_011344_190--Hb_008232_010 Hb_011344_190--Hb_005488_200 Hb_003633_050 Hb_003633_050 Hb_011344_190--Hb_003633_050 Hb_001222_080 Hb_001222_080 Hb_011344_190--Hb_001222_080 Hb_005488_200--Hb_007416_060 Hb_148113_010 Hb_148113_010 Hb_005488_200--Hb_148113_010 Hb_000603_080 Hb_000603_080 Hb_005488_200--Hb_000603_080 Hb_003697_040 Hb_003697_040 Hb_005488_200--Hb_003697_040 Hb_003768_030 Hb_003768_030 Hb_001195_200--Hb_003768_030 Hb_001489_090 Hb_001489_090 Hb_001195_200--Hb_001489_090 Hb_001195_200--Hb_000327_180 Hb_000258_260 Hb_000258_260 Hb_001195_200--Hb_000258_260 Hb_001123_160 Hb_001123_160 Hb_008232_010--Hb_001123_160 Hb_004672_010 Hb_004672_010 Hb_008232_010--Hb_004672_010 Hb_003622_040 Hb_003622_040 Hb_008232_010--Hb_003622_040 Hb_015183_060 Hb_015183_060 Hb_008232_010--Hb_015183_060 Hb_015778_010 Hb_015778_010 Hb_006420_080--Hb_015778_010 Hb_010883_050 Hb_010883_050 Hb_006420_080--Hb_010883_050 Hb_001902_140 Hb_001902_140 Hb_006420_080--Hb_001902_140 Hb_001489_080 Hb_001489_080 Hb_006420_080--Hb_001489_080 Hb_006420_080--Hb_003697_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.9118 23.9712 29.2659 50.0441 23.3585 25.4023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.4307 76.4733 73.4125 63.1415 51.039

CAGE analysis