Hb_000982_090

Information

Type -
Description -
Location Contig982: 150349-154089
Sequence    

Annotation

kegg
ID fve:101314901
description zinc finger HIT domain-containing protein 3-like
nr
ID XP_012085170.1
description PREDICTED: zinc finger HIT domain-containing protein 3 [Jatropha curcas]
swissprot
ID Q9CQK1
description Zinc finger HIT domain-containing protein 3 OS=Mus musculus GN=Znhit3 PE=1 SV=1
trembl
ID U5GRC1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s25400g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64418: 150365-154177
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000982_090 0.0 - - PREDICTED: zinc finger HIT domain-containing protein 3 [Jatropha curcas]
2 Hb_172426_040 0.0651165076 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
3 Hb_001140_370 0.074609997 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
4 Hb_001124_090 0.075829357 - - acyl carrier protein, putative [Ricinus communis]
5 Hb_006059_050 0.0773561911 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
6 Hb_001016_030 0.0778628996 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
7 Hb_009051_030 0.0804754764 - - PREDICTED: thioredoxin O1, mitochondrial-like [Jatropha curcas]
8 Hb_024071_020 0.0812079111 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
9 Hb_009182_010 0.0814304497 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
10 Hb_003787_010 0.0824529098 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
11 Hb_001476_080 0.0829017845 - - PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]
12 Hb_003918_010 0.0837755613 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
13 Hb_000815_320 0.0842045216 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
14 Hb_000221_160 0.0842330515 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
15 Hb_007875_030 0.0869730057 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
16 Hb_000217_030 0.0870764207 - - Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]
17 Hb_002893_050 0.0872971625 - - hypothetical protein POPTR_0006s26510g [Populus trichocarpa]
18 Hb_000465_390 0.0875903001 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Jatropha curcas]
19 Hb_001616_040 0.0876760556 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
20 Hb_000102_020 0.0876880387 - - hypothetical protein JCGZ_11933 [Jatropha curcas]

Gene co-expression network

sample Hb_000982_090 Hb_000982_090 Hb_172426_040 Hb_172426_040 Hb_000982_090--Hb_172426_040 Hb_001140_370 Hb_001140_370 Hb_000982_090--Hb_001140_370 Hb_001124_090 Hb_001124_090 Hb_000982_090--Hb_001124_090 Hb_006059_050 Hb_006059_050 Hb_000982_090--Hb_006059_050 Hb_001016_030 Hb_001016_030 Hb_000982_090--Hb_001016_030 Hb_009051_030 Hb_009051_030 Hb_000982_090--Hb_009051_030 Hb_003918_010 Hb_003918_010 Hb_172426_040--Hb_003918_010 Hb_003787_010 Hb_003787_010 Hb_172426_040--Hb_003787_010 Hb_172426_040--Hb_006059_050 Hb_000020_060 Hb_000020_060 Hb_172426_040--Hb_000020_060 Hb_004116_190 Hb_004116_190 Hb_172426_040--Hb_004116_190 Hb_024071_020 Hb_024071_020 Hb_001140_370--Hb_024071_020 Hb_001140_370--Hb_001016_030 Hb_001157_020 Hb_001157_020 Hb_001140_370--Hb_001157_020 Hb_001140_370--Hb_003918_010 Hb_001140_370--Hb_006059_050 Hb_001140_370--Hb_172426_040 Hb_001318_250 Hb_001318_250 Hb_001124_090--Hb_001318_250 Hb_000934_250 Hb_000934_250 Hb_001124_090--Hb_000934_250 Hb_001124_090--Hb_006059_050 Hb_000317_390 Hb_000317_390 Hb_001124_090--Hb_000317_390 Hb_002601_110 Hb_002601_110 Hb_001124_090--Hb_002601_110 Hb_003151_040 Hb_003151_040 Hb_006059_050--Hb_003151_040 Hb_008013_050 Hb_008013_050 Hb_006059_050--Hb_008013_050 Hb_000373_070 Hb_000373_070 Hb_006059_050--Hb_000373_070 Hb_005846_040 Hb_005846_040 Hb_006059_050--Hb_005846_040 Hb_000152_500 Hb_000152_500 Hb_006059_050--Hb_000152_500 Hb_001616_040 Hb_001616_040 Hb_001016_030--Hb_001616_040 Hb_000201_120 Hb_000201_120 Hb_001016_030--Hb_000201_120 Hb_001421_060 Hb_001421_060 Hb_001016_030--Hb_001421_060 Hb_003126_090 Hb_003126_090 Hb_001016_030--Hb_003126_090 Hb_002830_020 Hb_002830_020 Hb_001016_030--Hb_002830_020 Hb_000102_020 Hb_000102_020 Hb_009051_030--Hb_000102_020 Hb_009051_030--Hb_003787_010 Hb_001057_040 Hb_001057_040 Hb_009051_030--Hb_001057_040 Hb_005784_110 Hb_005784_110 Hb_009051_030--Hb_005784_110 Hb_000656_170 Hb_000656_170 Hb_009051_030--Hb_000656_170 Hb_000574_480 Hb_000574_480 Hb_009051_030--Hb_000574_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.8508 6.33208 13.2504 16.2198 8.95196 16.8506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.3506 29.3899 15.3164 13.3547 8.72679

CAGE analysis