Hb_000982_110

Information

Type -
Description -
Location Contig982: 185602-188113
Sequence    

Annotation

kegg
ID rcu:RCOM_1722530
description chaperonin-60kD, ch60, putative
nr
ID XP_012085173.1
description PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]
swissprot
ID P29185
description Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=CPN60I PE=1 SV=2
trembl
ID A0A067K3N8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17587 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000982_110 0.0 - - PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]
2 Hb_002067_020 0.1366087308 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010642_030 0.143316089 - - zinc phosphodiesterase, putative [Ricinus communis]
4 Hb_153533_010 0.1433399324 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X3 [Jatropha curcas]
5 Hb_008489_020 0.1505757759 - - PREDICTED: uncharacterized protein LOC105644663 [Jatropha curcas]
6 Hb_003405_050 0.1576150554 - - -
7 Hb_005488_060 0.1617349675 - - cytochrome P450, putative [Ricinus communis]
8 Hb_000077_090 0.165355025 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000627_030 0.1662286082 - - amine oxidase, putative [Ricinus communis]
10 Hb_000523_090 0.1668473711 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
11 Hb_006788_160 0.1703652214 - - hypothetical protein POPTR_0002s04680g [Populus trichocarpa]
12 Hb_000982_160 0.1707162697 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
13 Hb_000364_080 0.1708065159 - - PREDICTED: OTU domain-containing protein 3 isoform X1 [Jatropha curcas]
14 Hb_000193_270 0.1738034595 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
15 Hb_001350_010 0.1750267598 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
16 Hb_003663_060 0.1838445483 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g43820 [Jatropha curcas]
17 Hb_000268_020 0.184181358 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007741_020 0.1842672599 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
19 Hb_000889_020 0.1864571081 - - ribosome biogenesis protein brix, putative [Ricinus communis]
20 Hb_010381_120 0.1867217451 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]

Gene co-expression network

sample Hb_000982_110 Hb_000982_110 Hb_002067_020 Hb_002067_020 Hb_000982_110--Hb_002067_020 Hb_010642_030 Hb_010642_030 Hb_000982_110--Hb_010642_030 Hb_153533_010 Hb_153533_010 Hb_000982_110--Hb_153533_010 Hb_008489_020 Hb_008489_020 Hb_000982_110--Hb_008489_020 Hb_003405_050 Hb_003405_050 Hb_000982_110--Hb_003405_050 Hb_005488_060 Hb_005488_060 Hb_000982_110--Hb_005488_060 Hb_000523_090 Hb_000523_090 Hb_002067_020--Hb_000523_090 Hb_000364_080 Hb_000364_080 Hb_002067_020--Hb_000364_080 Hb_031862_180 Hb_031862_180 Hb_002067_020--Hb_031862_180 Hb_003363_010 Hb_003363_010 Hb_002067_020--Hb_003363_010 Hb_000364_060 Hb_000364_060 Hb_002067_020--Hb_000364_060 Hb_134364_010 Hb_134364_010 Hb_002067_020--Hb_134364_010 Hb_010642_030--Hb_000364_080 Hb_002784_060 Hb_002784_060 Hb_010642_030--Hb_002784_060 Hb_010642_030--Hb_000523_090 Hb_000627_030 Hb_000627_030 Hb_010642_030--Hb_000627_030 Hb_010642_030--Hb_002067_020 Hb_002942_160 Hb_002942_160 Hb_010642_030--Hb_002942_160 Hb_000193_270 Hb_000193_270 Hb_153533_010--Hb_000193_270 Hb_004994_380 Hb_004994_380 Hb_153533_010--Hb_004994_380 Hb_001951_180 Hb_001951_180 Hb_153533_010--Hb_001951_180 Hb_003663_060 Hb_003663_060 Hb_153533_010--Hb_003663_060 Hb_035755_010 Hb_035755_010 Hb_153533_010--Hb_035755_010 Hb_004218_280 Hb_004218_280 Hb_153533_010--Hb_004218_280 Hb_008489_020--Hb_005488_060 Hb_000170_190 Hb_000170_190 Hb_008489_020--Hb_000170_190 Hb_012286_010 Hb_012286_010 Hb_008489_020--Hb_012286_010 Hb_002084_020 Hb_002084_020 Hb_008489_020--Hb_002084_020 Hb_002601_130 Hb_002601_130 Hb_008489_020--Hb_002601_130 Hb_006915_070 Hb_006915_070 Hb_008489_020--Hb_006915_070 Hb_003405_050--Hb_002067_020 Hb_001350_010 Hb_001350_010 Hb_003405_050--Hb_001350_010 Hb_000589_150 Hb_000589_150 Hb_003405_050--Hb_000589_150 Hb_007380_090 Hb_007380_090 Hb_003405_050--Hb_007380_090 Hb_114343_010 Hb_114343_010 Hb_003405_050--Hb_114343_010 Hb_003405_050--Hb_003363_010 Hb_002193_010 Hb_002193_010 Hb_005488_060--Hb_002193_010 Hb_009393_050 Hb_009393_050 Hb_005488_060--Hb_009393_050 Hb_001638_250 Hb_001638_250 Hb_005488_060--Hb_001638_250 Hb_000982_160 Hb_000982_160 Hb_005488_060--Hb_000982_160 Hb_002863_040 Hb_002863_040 Hb_005488_060--Hb_002863_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.503296 0.102101 0.0728966 0.210007 0.295459 0.759741
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.560337 0.220287 0.0993587 0.133878 0.551178

CAGE analysis