Hb_000982_120

Information

Type transcription factor
Description TF Family: Orphans
Location Contig982: 189300-189818
Sequence    

Annotation

kegg
ID rcu:RCOM_1722740
description sensory transduction histidine kinase bacterial, putative
nr
ID XP_002521152.1
description sensory transduction histidine kinase bacterial, putative [Ricinus communis]
swissprot
ID Q9M8Y4
description Two-component response regulator ARR22 OS=Arabidopsis thaliana GN=ARR22 PE=2 SV=1
trembl
ID B9S583
description Sensory transduction histidine kinase bacterial, putative OS=Ricinus communis GN=RCOM_1722740 PE=4 SV=1
Gene Ontology
ID GO:0005622
description two-component response regulator arr22-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000982_120 0.0 transcription factor TF Family: Orphans sensory transduction histidine kinase bacterial, putative [Ricinus communis]
2 Hb_002566_010 0.0719860568 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
3 Hb_059780_010 0.0962512597 - - PREDICTED: uncharacterized protein LOC104885482, partial [Beta vulgaris subsp. vulgaris]
4 Hb_121441_010 0.1162409508 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
5 Hb_031931_030 0.1227376527 - - lipid binding protein, putative [Ricinus communis]
6 Hb_002900_040 0.1331236716 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]
7 Hb_145211_010 0.1453465017 - - hypothetical protein M569_05648, partial [Genlisea aurea]
8 Hb_010761_030 0.151094032 - - cytochrome P450, putative [Ricinus communis]
9 Hb_000675_040 0.1525694406 - - hypothetical protein OsI_02937 [Oryza sativa Indica Group]
10 Hb_000009_430 0.1527046915 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000149_090 0.1623447434 - - -
12 Hb_001430_090 0.1695896202 - - hypothetical protein JCGZ_05131 [Jatropha curcas]
13 Hb_029769_010 0.1762331127 - - PREDICTED: putative disease resistance protein RGA3 isoform X3 [Populus euphratica]
14 Hb_007676_060 0.1808146351 - - PREDICTED: cellulose synthase-like protein E2 [Pyrus x bretschneideri]
15 Hb_008692_020 0.1820951862 - - -
16 Hb_000207_340 0.1862644759 transcription factor TF Family: GRAS hypothetical protein POPTR_0013s11930g [Populus trichocarpa]
17 Hb_078081_020 0.1893113717 - - -
18 Hb_000138_080 0.193660976 - - conserved hypothetical protein [Ricinus communis]
19 Hb_130563_010 0.1961472002 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
20 Hb_000120_880 0.1984413271 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]

Gene co-expression network

sample Hb_000982_120 Hb_000982_120 Hb_002566_010 Hb_002566_010 Hb_000982_120--Hb_002566_010 Hb_059780_010 Hb_059780_010 Hb_000982_120--Hb_059780_010 Hb_121441_010 Hb_121441_010 Hb_000982_120--Hb_121441_010 Hb_031931_030 Hb_031931_030 Hb_000982_120--Hb_031931_030 Hb_002900_040 Hb_002900_040 Hb_000982_120--Hb_002900_040 Hb_145211_010 Hb_145211_010 Hb_000982_120--Hb_145211_010 Hb_002566_010--Hb_031931_030 Hb_002566_010--Hb_059780_010 Hb_002566_010--Hb_145211_010 Hb_010761_030 Hb_010761_030 Hb_002566_010--Hb_010761_030 Hb_000149_090 Hb_000149_090 Hb_002566_010--Hb_000149_090 Hb_059780_010--Hb_145211_010 Hb_000675_040 Hb_000675_040 Hb_059780_010--Hb_000675_040 Hb_059780_010--Hb_121441_010 Hb_059780_010--Hb_031931_030 Hb_121441_010--Hb_000149_090 Hb_121441_010--Hb_000675_040 Hb_121441_010--Hb_145211_010 Hb_121441_010--Hb_002566_010 Hb_031931_030--Hb_010761_030 Hb_029769_010 Hb_029769_010 Hb_031931_030--Hb_029769_010 Hb_008692_020 Hb_008692_020 Hb_031931_030--Hb_008692_020 Hb_130563_010 Hb_130563_010 Hb_031931_030--Hb_130563_010 Hb_001430_090 Hb_001430_090 Hb_002900_040--Hb_001430_090 Hb_000163_010 Hb_000163_010 Hb_002900_040--Hb_000163_010 Hb_002900_040--Hb_031931_030 Hb_150084_010 Hb_150084_010 Hb_002900_040--Hb_150084_010 Hb_001863_080 Hb_001863_080 Hb_002900_040--Hb_001863_080 Hb_145211_010--Hb_000675_040 Hb_000946_030 Hb_000946_030 Hb_145211_010--Hb_000946_030 Hb_002122_050 Hb_002122_050 Hb_145211_010--Hb_002122_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.119454 0 0.418659 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.966583 0.46394

CAGE analysis