Hb_000982_160

Information

Type -
Description -
Location Contig982: 219334-235185
Sequence    

Annotation

kegg
ID rcu:RCOM_1722960
description hypothetical protein
nr
ID XP_012085174.1
description PREDICTED: CLIP-associated protein [Jatropha curcas]
swissprot
ID Q8RWY6
description CLIP-associated protein OS=Arabidopsis thaliana GN=CLASP PE=1 SV=1
trembl
ID A0A067JR47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17589 PE=4 SV=1
Gene Ontology
ID GO:0005876
description clip-associated protein isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64429: 219389-235108
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000982_160 0.0 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
2 Hb_028390_010 0.0846700069 - - PREDICTED: filament-like plant protein 3 [Populus euphratica]
3 Hb_000212_240 0.0896722842 - - short-chain dehydrogenase, putative [Ricinus communis]
4 Hb_000367_130 0.0906110201 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000913_050 0.0909256056 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
6 Hb_000025_110 0.0928276626 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
7 Hb_000329_090 0.0929534168 - - arginase, putative [Ricinus communis]
8 Hb_015763_030 0.0960931229 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001863_110 0.0965712205 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
10 Hb_006445_010 0.0972169888 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
11 Hb_030131_040 0.0972299717 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
12 Hb_001689_020 0.1008776519 - - hypothetical protein JCGZ_10660 [Jatropha curcas]
13 Hb_000714_050 0.1011937768 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
14 Hb_000567_050 0.1017016103 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
15 Hb_001300_070 0.1023771328 - - OTU domain-containing protein 6B, putative [Ricinus communis]
16 Hb_000866_470 0.1025618693 - - PREDICTED: uncharacterized protein LOC105643015 [Jatropha curcas]
17 Hb_001444_010 0.1027022148 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
18 Hb_000364_080 0.1029853175 - - PREDICTED: OTU domain-containing protein 3 isoform X1 [Jatropha curcas]
19 Hb_000606_090 0.1031047523 - - Far upstream element-binding protein, putative [Ricinus communis]
20 Hb_004218_240 0.1034975156 - - PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000982_160 Hb_000982_160 Hb_028390_010 Hb_028390_010 Hb_000982_160--Hb_028390_010 Hb_000212_240 Hb_000212_240 Hb_000982_160--Hb_000212_240 Hb_000367_130 Hb_000367_130 Hb_000982_160--Hb_000367_130 Hb_000913_050 Hb_000913_050 Hb_000982_160--Hb_000913_050 Hb_000025_110 Hb_000025_110 Hb_000982_160--Hb_000025_110 Hb_000329_090 Hb_000329_090 Hb_000982_160--Hb_000329_090 Hb_007044_080 Hb_007044_080 Hb_028390_010--Hb_007044_080 Hb_002527_030 Hb_002527_030 Hb_028390_010--Hb_002527_030 Hb_001689_020 Hb_001689_020 Hb_028390_010--Hb_001689_020 Hb_000933_090 Hb_000933_090 Hb_028390_010--Hb_000933_090 Hb_000645_050 Hb_000645_050 Hb_028390_010--Hb_000645_050 Hb_004881_020 Hb_004881_020 Hb_000212_240--Hb_004881_020 Hb_006252_040 Hb_006252_040 Hb_000212_240--Hb_006252_040 Hb_002716_130 Hb_002716_130 Hb_000212_240--Hb_002716_130 Hb_000212_240--Hb_000025_110 Hb_004117_130 Hb_004117_130 Hb_000212_240--Hb_004117_130 Hb_000606_090 Hb_000606_090 Hb_000212_240--Hb_000606_090 Hb_000367_130--Hb_000913_050 Hb_000679_130 Hb_000679_130 Hb_000367_130--Hb_000679_130 Hb_001983_030 Hb_001983_030 Hb_000367_130--Hb_001983_030 Hb_001444_010 Hb_001444_010 Hb_000367_130--Hb_001444_010 Hb_007026_030 Hb_007026_030 Hb_000367_130--Hb_007026_030 Hb_001828_160 Hb_001828_160 Hb_000367_130--Hb_001828_160 Hb_000913_050--Hb_001828_160 Hb_000207_310 Hb_000207_310 Hb_000913_050--Hb_000207_310 Hb_000029_130 Hb_000029_130 Hb_000913_050--Hb_000029_130 Hb_000116_180 Hb_000116_180 Hb_000913_050--Hb_000116_180 Hb_000913_050--Hb_001444_010 Hb_000025_110--Hb_001444_010 Hb_000025_110--Hb_006252_040 Hb_000618_030 Hb_000618_030 Hb_000025_110--Hb_000618_030 Hb_000025_110--Hb_000679_130 Hb_001599_030 Hb_001599_030 Hb_000025_110--Hb_001599_030 Hb_000743_040 Hb_000743_040 Hb_000329_090--Hb_000743_040 Hb_000714_050 Hb_000714_050 Hb_000329_090--Hb_000714_050 Hb_000567_050 Hb_000567_050 Hb_000329_090--Hb_000567_050 Hb_000320_200 Hb_000320_200 Hb_000329_090--Hb_000320_200 Hb_001235_200 Hb_001235_200 Hb_000329_090--Hb_001235_200 Hb_010381_060 Hb_010381_060 Hb_000329_090--Hb_010381_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.7805 12.1352 12.917 17.3711 37.1911 40.0416
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.932 12.3093 11.2909 11.3427 23.0743

CAGE analysis