Hb_000983_050

Information

Type -
Description -
Location Contig983: 26484-30883
Sequence    

Annotation

kegg
ID rcu:RCOM_1595670
description ubiquitin-protein ligase, putative
nr
ID XP_002510437.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R7Z4
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1595670 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring u-box superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64445: 25916-30816 , PASA_asmbl_64446: 30350-30471 , PASA_asmbl_64450: 27735-28056
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000983_050 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_004607_090 0.0701133814 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
3 Hb_023344_150 0.0735631225 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
4 Hb_011360_050 0.0831771072 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
5 Hb_002982_020 0.0852613658 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
6 Hb_000367_090 0.0861455745 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
7 Hb_000046_170 0.0880696867 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
8 Hb_000603_160 0.0893743966 - - PREDICTED: fatty-acid-binding protein 2 [Jatropha curcas]
9 Hb_000215_320 0.0893778073 - - phosphofructokinase [Hevea brasiliensis]
10 Hb_004705_170 0.0898521683 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
11 Hb_007472_070 0.0904426418 - - cir, putative [Ricinus communis]
12 Hb_189216_010 0.0911312185 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
13 Hb_006452_120 0.0915460045 - - PREDICTED: protein FAM188A [Jatropha curcas]
14 Hb_002915_060 0.0929667693 - - PREDICTED: serine/threonine-protein kinase CTR1-like [Jatropha curcas]
15 Hb_001141_420 0.0955378112 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
16 Hb_002110_080 0.0963047745 - - FH interacting protein 1 [Theobroma cacao]
17 Hb_000704_030 0.0967804416 - - PREDICTED: probable aquaporin SIP2-1 [Cicer arietinum]
18 Hb_013057_020 0.097127653 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
19 Hb_007839_020 0.0973451409 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004117_110 0.0975956866 - - hypothetical protein POPTR_0016s14420g [Populus trichocarpa]

Gene co-expression network

sample Hb_000983_050 Hb_000983_050 Hb_004607_090 Hb_004607_090 Hb_000983_050--Hb_004607_090 Hb_023344_150 Hb_023344_150 Hb_000983_050--Hb_023344_150 Hb_011360_050 Hb_011360_050 Hb_000983_050--Hb_011360_050 Hb_002982_020 Hb_002982_020 Hb_000983_050--Hb_002982_020 Hb_000367_090 Hb_000367_090 Hb_000983_050--Hb_000367_090 Hb_000046_170 Hb_000046_170 Hb_000983_050--Hb_000046_170 Hb_007472_070 Hb_007472_070 Hb_004607_090--Hb_007472_070 Hb_000603_160 Hb_000603_160 Hb_004607_090--Hb_000603_160 Hb_000087_070 Hb_000087_070 Hb_004607_090--Hb_000087_070 Hb_000300_270 Hb_000300_270 Hb_004607_090--Hb_000300_270 Hb_005162_090 Hb_005162_090 Hb_004607_090--Hb_005162_090 Hb_000731_200 Hb_000731_200 Hb_023344_150--Hb_000731_200 Hb_001328_080 Hb_001328_080 Hb_023344_150--Hb_001328_080 Hb_000023_300 Hb_000023_300 Hb_023344_150--Hb_000023_300 Hb_008748_030 Hb_008748_030 Hb_023344_150--Hb_008748_030 Hb_000227_160 Hb_000227_160 Hb_023344_150--Hb_000227_160 Hb_000802_090 Hb_000802_090 Hb_011360_050--Hb_000802_090 Hb_007839_020 Hb_007839_020 Hb_011360_050--Hb_007839_020 Hb_002232_480 Hb_002232_480 Hb_011360_050--Hb_002232_480 Hb_011360_050--Hb_002982_020 Hb_001329_200 Hb_001329_200 Hb_011360_050--Hb_001329_200 Hb_000089_180 Hb_000089_180 Hb_011360_050--Hb_000089_180 Hb_001269_380 Hb_001269_380 Hb_002982_020--Hb_001269_380 Hb_012092_050 Hb_012092_050 Hb_002982_020--Hb_012092_050 Hb_006452_120 Hb_006452_120 Hb_002982_020--Hb_006452_120 Hb_000778_010 Hb_000778_010 Hb_002982_020--Hb_000778_010 Hb_001221_430 Hb_001221_430 Hb_002982_020--Hb_001221_430 Hb_000367_090--Hb_000046_170 Hb_028487_160 Hb_028487_160 Hb_000367_090--Hb_028487_160 Hb_000367_090--Hb_000227_160 Hb_002357_060 Hb_002357_060 Hb_000367_090--Hb_002357_060 Hb_004705_170 Hb_004705_170 Hb_000367_090--Hb_004705_170 Hb_189216_010 Hb_189216_010 Hb_000367_090--Hb_189216_010 Hb_004607_070 Hb_004607_070 Hb_000046_170--Hb_004607_070 Hb_000179_270 Hb_000179_270 Hb_000046_170--Hb_000179_270 Hb_000046_170--Hb_028487_160 Hb_000046_170--Hb_000087_070 Hb_000165_080 Hb_000165_080 Hb_000046_170--Hb_000165_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.17421 18.7886 12.8684 27.7927 6.86058 9.2293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5493 15.1332 9.37831 13.6392 13.5936

CAGE analysis