Hb_000983_070

Information

Type -
Description -
Location Contig983: 56185-58942
Sequence    

Annotation

kegg
ID rcu:RCOM_1595660
description hypothetical protein
nr
ID XP_002510436.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8GZ79
description Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana GN=TIC20-I PE=1 SV=1
trembl
ID B9R7Z3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1595660 PE=4 SV=1
Gene Ontology
ID GO:0005622
description protein tic 20- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64451: 56219-58917
cDNA
(Sanger)
(ID:Location)		 036_B21.ab1: 56219-58371

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000983_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001898_180 0.0797493212 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
3 Hb_010128_020 0.0813561048 - - hypothetical protein POPTR_0001s24210g [Populus trichocarpa]
4 Hb_000816_200 0.0823238564 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
5 Hb_003124_120 0.0842069319 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
6 Hb_001629_090 0.0856391279 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002053_010 0.0946447957 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
8 Hb_001214_050 0.0946456757 - - PREDICTED: bifunctional monothiol glutaredoxin-S16, chloroplastic [Jatropha curcas]
9 Hb_001195_770 0.095003552 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
10 Hb_001711_120 0.0952202502 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
11 Hb_002762_110 0.0960733266 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002075_030 0.0969078512 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
13 Hb_000388_060 0.097571688 - - fructokinase [Manihot esculenta]
14 Hb_002290_030 0.0990456511 - - PREDICTED: uncharacterized protein LOC105635877 isoform X1 [Jatropha curcas]
15 Hb_005489_090 0.1003682315 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
16 Hb_000594_100 0.1011557634 - - PREDICTED: methionine aminopeptidase 1B, chloroplastic [Jatropha curcas]
17 Hb_001789_200 0.1014825417 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
18 Hb_001373_130 0.101535984 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000114_150 0.1016393061 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl-diphosphate synthase [Hevea brasiliensis]
20 Hb_005305_020 0.1035483052 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000983_070 Hb_000983_070 Hb_001898_180 Hb_001898_180 Hb_000983_070--Hb_001898_180 Hb_010128_020 Hb_010128_020 Hb_000983_070--Hb_010128_020 Hb_000816_200 Hb_000816_200 Hb_000983_070--Hb_000816_200 Hb_003124_120 Hb_003124_120 Hb_000983_070--Hb_003124_120 Hb_001629_090 Hb_001629_090 Hb_000983_070--Hb_001629_090 Hb_002053_010 Hb_002053_010 Hb_000983_070--Hb_002053_010 Hb_001898_180--Hb_002053_010 Hb_020378_060 Hb_020378_060 Hb_001898_180--Hb_020378_060 Hb_000189_450 Hb_000189_450 Hb_001898_180--Hb_000189_450 Hb_007632_170 Hb_007632_170 Hb_001898_180--Hb_007632_170 Hb_000622_290 Hb_000622_290 Hb_001898_180--Hb_000622_290 Hb_003029_020 Hb_003029_020 Hb_010128_020--Hb_003029_020 Hb_010128_020--Hb_003124_120 Hb_002075_030 Hb_002075_030 Hb_010128_020--Hb_002075_030 Hb_010128_020--Hb_000816_200 Hb_000112_060 Hb_000112_060 Hb_010128_020--Hb_000112_060 Hb_016461_030 Hb_016461_030 Hb_000816_200--Hb_016461_030 Hb_001195_770 Hb_001195_770 Hb_000816_200--Hb_001195_770 Hb_000816_200--Hb_003124_120 Hb_029920_030 Hb_029920_030 Hb_000816_200--Hb_029920_030 Hb_000816_200--Hb_000189_450 Hb_007441_310 Hb_007441_310 Hb_000816_200--Hb_007441_310 Hb_003124_120--Hb_016461_030 Hb_001677_220 Hb_001677_220 Hb_003124_120--Hb_001677_220 Hb_003124_120--Hb_002075_030 Hb_002290_030 Hb_002290_030 Hb_001629_090--Hb_002290_030 Hb_004375_050 Hb_004375_050 Hb_001629_090--Hb_004375_050 Hb_001711_120 Hb_001711_120 Hb_001629_090--Hb_001711_120 Hb_003462_180 Hb_003462_180 Hb_001629_090--Hb_003462_180 Hb_002762_110 Hb_002762_110 Hb_001629_090--Hb_002762_110 Hb_001789_200 Hb_001789_200 Hb_002053_010--Hb_001789_200 Hb_008695_200 Hb_008695_200 Hb_002053_010--Hb_008695_200 Hb_016219_030 Hb_016219_030 Hb_002053_010--Hb_016219_030 Hb_001369_790 Hb_001369_790 Hb_002053_010--Hb_001369_790 Hb_004440_060 Hb_004440_060 Hb_002053_010--Hb_004440_060 Hb_000086_080 Hb_000086_080 Hb_002053_010--Hb_000086_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.25767 14.9829 40.3942 29.9578 8.46672 9.90926
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.6818 33.1102 19.971 24.5236 94.904

CAGE analysis