Hb_000983_100

Information

Type -
Description -
Location Contig983: 75967-81861
Sequence    

Annotation

kegg
ID vvi:100254067
description AP-4 complex subunit mu
nr
ID XP_002281307.1
description PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
swissprot
ID Q9SB50
description AP-4 complex subunit mu OS=Arabidopsis thaliana GN=AP4M PE=2 SV=1
trembl
ID A0A067L232
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04475 PE=4 SV=1
Gene Ontology
ID GO:0005829
description ap-4 complex subunit mu

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64455: 74910-75245 , PASA_asmbl_64456: 76077-81839 , PASA_asmbl_64458: 81149-81319
cDNA
(Sanger)
(ID:Location)		 002_C03.ab1: 76078-79457 , 034_P22.ab1: 76078-79492

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000983_100 0.0 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
2 Hb_007229_060 0.0669107167 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
3 Hb_001473_130 0.0712000309 - - PREDICTED: ubiquinone biosynthesis monooxygenase COQ6 [Jatropha curcas]
4 Hb_000091_090 0.0722043421 - - hypothetical protein JCGZ_09031 [Jatropha curcas]
5 Hb_002025_320 0.0780697628 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
6 Hb_026988_020 0.0780759657 - - outward rectifying K+ channel [Hevea brasiliensis]
7 Hb_002527_070 0.0782326989 - - axonemal dynein light chain, putative [Ricinus communis]
8 Hb_001981_090 0.0785584514 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
9 Hb_000836_070 0.0815435084 - - protein binding protein, putative [Ricinus communis]
10 Hb_000086_570 0.0816635595 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
11 Hb_001427_120 0.0842744002 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
12 Hb_000861_040 0.0847963555 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
13 Hb_000956_010 0.0850925888 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
14 Hb_002392_040 0.0853426367 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001366_220 0.0862385601 - - conserved hypothetical protein [Ricinus communis]
16 Hb_071736_020 0.0892863704 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
17 Hb_002357_040 0.0900604191 - - latex-abundant protein [Hevea brasiliensis]
18 Hb_001718_100 0.0915518662 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
19 Hb_000156_100 0.0931965096 - - PREDICTED: uncharacterized mitochondrial protein ymf11 [Jatropha curcas]
20 Hb_002794_030 0.093282153 - - hypothetical protein JCGZ_20185 [Jatropha curcas]

Gene co-expression network

sample Hb_000983_100 Hb_000983_100 Hb_007229_060 Hb_007229_060 Hb_000983_100--Hb_007229_060 Hb_001473_130 Hb_001473_130 Hb_000983_100--Hb_001473_130 Hb_000091_090 Hb_000091_090 Hb_000983_100--Hb_000091_090 Hb_002025_320 Hb_002025_320 Hb_000983_100--Hb_002025_320 Hb_026988_020 Hb_026988_020 Hb_000983_100--Hb_026988_020 Hb_002527_070 Hb_002527_070 Hb_000983_100--Hb_002527_070 Hb_002307_090 Hb_002307_090 Hb_007229_060--Hb_002307_090 Hb_000861_040 Hb_000861_040 Hb_007229_060--Hb_000861_040 Hb_002326_030 Hb_002326_030 Hb_007229_060--Hb_002326_030 Hb_002794_030 Hb_002794_030 Hb_007229_060--Hb_002794_030 Hb_001981_090 Hb_001981_090 Hb_007229_060--Hb_001981_090 Hb_001473_130--Hb_002025_320 Hb_002352_010 Hb_002352_010 Hb_001473_130--Hb_002352_010 Hb_001473_130--Hb_002326_030 Hb_001473_130--Hb_002527_070 Hb_000427_110 Hb_000427_110 Hb_001473_130--Hb_000427_110 Hb_021650_030 Hb_021650_030 Hb_000091_090--Hb_021650_030 Hb_003151_050 Hb_003151_050 Hb_000091_090--Hb_003151_050 Hb_000086_570 Hb_000086_570 Hb_000091_090--Hb_000086_570 Hb_002411_200 Hb_002411_200 Hb_000091_090--Hb_002411_200 Hb_001881_020 Hb_001881_020 Hb_000091_090--Hb_001881_020 Hb_001427_120 Hb_001427_120 Hb_002025_320--Hb_001427_120 Hb_000152_140 Hb_000152_140 Hb_002025_320--Hb_000152_140 Hb_001718_100 Hb_001718_100 Hb_002025_320--Hb_001718_100 Hb_000956_010 Hb_000956_010 Hb_002025_320--Hb_000956_010 Hb_026988_020--Hb_000956_010 Hb_001366_230 Hb_001366_230 Hb_026988_020--Hb_001366_230 Hb_026988_020--Hb_000861_040 Hb_004108_050 Hb_004108_050 Hb_026988_020--Hb_004108_050 Hb_001677_110 Hb_001677_110 Hb_026988_020--Hb_001677_110 Hb_002527_070--Hb_001427_120 Hb_002527_070--Hb_000861_040 Hb_001711_030 Hb_001711_030 Hb_002527_070--Hb_001711_030 Hb_003408_030 Hb_003408_030 Hb_002527_070--Hb_003408_030 Hb_002527_070--Hb_002352_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.2665 8.68627 3.31013 6.33875 28.3237 36.6665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.5325 41.5564 57.2575 13.2251 2.90323

CAGE analysis